FastQCFastQC Report
Tue 27 Jun 2023
SRR836192.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR836192.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35640305
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length44
%GC65

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCCGCGGACGGTGTGAGGCCGGTGTCGGCCCCTCTGTAGGCA374879210.518406057411687No Hit
AGCCCGCGGACGGTGTGAGGCCGGTGTCGGCCCCCTGTAGGCAC17075114.790955071793016No Hit
GCCCGCGGACGGTGTGAGGCCGGTGTCGGCCCCTCTGTAGGCAC13709293.846569214264581No Hit
AGCCCGCGGACGGTGTGAGGCCGGTGTCGGCCCCCCTGTAGGCA12626523.5427642945255378No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCGCTGTAGGCAC7363102.0659475276656583No Hit
GCCCGCGGACGGTGTGAGGCCGGTGTCGGCCCCCTGTAGGCACC6569151.843180073795665No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCGCTGTAGGCACC5701351.5996916973634205No Hit
ATCCCGGGGCCACGCCTGTCTGAGGGTCGCCCTGTAGGCACCAT5670221.5909572042102331No Hit
CATCCCGGGGCCACGCCTGTCTGAGGGTCGCCCTGTAGGCACCA4953701.3899151536441678No Hit
GCCCGCGGACGGTGTGAGGCCGGTGTCGGCCCCCCTGTAGGCAC4792321.3446349575291232No Hit
TGGATAACTGTGGCAATTCCAGAGCTAATACATGCCTGTAGGCA3126280.8771754338241493No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCGCTGTAGGCACCA3058530.8581660566597284No Hit
GGAGCGCCGCGACCGGCTCCGGTTCGGCTTGGACTGTAGGCACC2901340.814061495826144No Hit
AGCCCGCGGACGGTGTGAGGCCGGTGTCGGCCCCTGTAGGCACC2341450.6569668806145177No Hit
GTTGAACCCCGCCCGTGATGGGGACCGGGGATTGCTGTAGGCAC2329280.653552207255241No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCGCCTGTAGGCA1722970.48343301214734274No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCCTGTAGGCACCA1708730.47943753567765485No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCCTGTAGGCACC1649950.4629449719916819No Hit
AGCCCGCGGACGGTGTGAGGCCGGTGTCGGCCCCCGCTGTAGGC1588540.44571447971615286No Hit
GAGCGCCGCGACCGGCTCCGGTTCGGCTTGGAAGCTGTAGGCAC1496500.4198897848938161No Hit
GGAGCGCCGCGACCGGCTCCGGTTCGGCTTGGAACTGTAGGCAC1431820.4017417920525652No Hit
CTCCGGGGCCGCGGGTGAGTGTCCTCCGCGCCCCTGTAGGCACC1273470.35731175701218043No Hit
GGGGGCCGCCCCTGCTTCTGGCGTCAAGCGCCCCGGCTGTAGGC1099210.3084176748768003No Hit
TTGGATAACTGTGGCAATTCCAGAGCTAATACATGCCTGTAGGC1091910.30636943202365974No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCGCCTGTAGGCAC973550.27315983968150664No Hit
GCCCGCGGACGGTGTGAGGCCGGTGTCGGCCCCTGTAGGCACCA920360.2582357249748564No Hit
CGACCCACGTTCGGGCGCCCGAGGTCCGCGGCGACTGTAGGCAC870150.24414774228222794No Hit
GCTTGCTCTCCGGGGCCGCGGGTGAGTGTCCTCCGCTGTAGGCA834200.23406084768354254No Hit
CGACCTCAGCTCAGACGAGAAGACCCGCTGACTGTAGGCACCAT824210.2312578413680803No Hit
CGACCTCAGCTCAGACGAGAAGACCCGCTGAACTGTAGGCACCA785480.22039093099792498No Hit
CGTTGAACCCCGCCCGTGATGGGGACCGGGGATTGCTGTAGGCA748490.21001223193797022No Hit
CTCCGGGGCCGCGGGTGAGTGTCCTCCGCGCCCTGTAGGCACCA748010.20987755295584593No Hit
GGAGCGCCGCGACCGGCTCCGGTTCGGCTTGGAAGCTGTAGGCA708850.19888999266420418No Hit
GTTGAACCCCGCCCGTGATGGGGACCGGGGATTCTGTAGGCACC687650.19294167095371378No Hit
AGCCCGCGGACGGTGTGAGGCCGGTGTCGGCCCCTGCTGTAGGC677430.190074130959317No Hit
GAGCGCCGCGACCGGCTCCGGTTCGGCTTTGAAGCTGTAGGCAC656080.18408372206691273No Hit
GCCCGCGGACGGTGTGAGGCCGGTGTCGGCCCCCGCTGTAGGCA647080.1815584911520819No Hit
CTCCGGGGCCGCGGGTGAGTGTCCTCCGCGCCCTCTGTAGGCAC643430.18053436972551162No Hit
TGGATAACTGTGGCAATTCCAGAGCTAATACATGCCCTGTAGGC639950.17955794710511036No Hit
TAGCCCGCGGACGGTGTGAGGCCGGTGTCGGCCCCTCTGTAGGC597310.16759396419306738No Hit
TGGCGGCGTCCGGTGAGCTCTCGTCGGCCCTTGCTGTAGGCACC590610.16571407006758218No Hit
CGCTTGCTCTCCGGGGCCGCGGGTGAGTGTCCTCCGCTGTAGGC551120.15463391797573No Hit
GCAGTTAAAAAGCTCGTAGTTGGATCTCGGCTGTAGGCACCATC544270.15271193666833097No Hit
GGGGGCCGCCCCTGCTTCTGGCGTCAAGCGCCCCGCTGTAGGCA508590.1427007989970905No Hit
GCCCGCGGACGGTGTGAGGCCGGGGTCGGCCCCCTGTAGGCACC505890.14194322972264126No Hit
CGTTGAACCCCGCCCGTGATGGGGACCGGGGATTCTGTAGGCAC461610.12951909362167355No Hit
TTGGTGACTCTAGATAACCTCGGGCCGCTCGCGCTGTAGGCACC459710.1289859893174315No Hit
GAGCGCCGCGACCGGCTCCGGTTCGGCTTGGAACTGTAGGCACC454560.12754099607172273No Hit
TGGATAACTGTGGCAATTCCAGAGCTAATACCTGTAGGCACCAT417120.11703603546602645No Hit
CAACTCTTAGCGGTGGATCACTCGGCTCGTGCCTGTAGGCACCA414850.11639911611306356No Hit
CTTGGATAACTGTGGCAATTCCAGAGCTAATACATGCCTGTAGG397800.11161520643552293No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTCGGCTGTAGGCACCAT394930.11080993835490464No Hit
GCTGCGATCCATTGAAAGTCAGCCCTCGATCCAACTGTAGGCAC380790.10684252000649265No Hit
TGCTGCGATCCATTGAAAGTCAGCCCTCGATCCAACTGTAGGCA379570.10650021092692669No Hit
GCGCCGCGACCGGCTCCGGTTCGGCTTTGGAGGGGCTGTAGGCA372940.10463995748633466No Hit
CGCCCCGGCGGGGGGCGCACCACCGGCCCGCCTCGCTGTAGGCA372250.10444635644953094No Hit
GAGCGCCGCGACCGGCTCCGGTTCGGCTTGGAAGGCTGTAGGCA369780.10375332085401626No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)