FastQCFastQC Report
Tue 27 Jun 2023
SRR836193.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR836193.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences133717425
Total Bases5.8 Gbp
Sequences flagged as poor quality0
Sequence length44
%GC64

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCGCTGTAGGCAC42879363.2067144577455036No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCGCTGTAGGCACC34798092.6023601636062015No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCGCTGTAGGCACCA22025411.647160794488826No Hit
GGAGCGCCGCGACCGGCTCCGGTTCGGCTTGGACTGTAGGCACC14883901.1130860469381607No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCCTGTAGGCACC12454110.9313752489625043No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCCTGTAGGCACCA12434620.9299176977121718No Hit
GGAGCGCCGCGACCGGCTCCGGTTCGGCTTGGAACTGTAGGCAC11982620.8961150725120529No Hit
TGGATAACTGTGGCAATTCCAGAGCTAATACATGCCTGTAGGCA8793570.6576233426570994No Hit
GAGCGCCGCGACCGGCTCCGGTTCGGCTTGGAAGCTGTAGGCAC6231590.46602677250178876No Hit
TGGATAACTGTGGCAATTCCAGAGCTAATACCTGTAGGCACCAT6088990.4553624929585654No Hit
GGAGCGCCGCGACCGGCTCCGGTTCGGCTTGGAAGCTGTAGGCA5033930.37646028556113764No Hit
GCTTGCTCTCCGGGGCCGCGGGTGAGTGTCCTCCGCTGTAGGCA4780760.35752707622061974No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCGCCTGTAGGCA4025060.3010123774070582No Hit
GCAGTTAAAAAGCTCGTAGTTGGATCTCGGCTGTAGGCACCATC3735320.2793442963772298No Hit
GCTGCGATCCATTGAAAGTCAGCCCTCGATCCACTGTAGGCACC3123760.23360904534319293No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCTGTAGGCACCA3052040.22824549605258998No Hit
CTTGGATAACTGTGGCAATTCCAGAGCTAATACTGTAGGCACCA3016100.2255577386417664No Hit
GCTGCGATCCATTGAAAGTCAGCCCTCGATCCAACTGTAGGCAC2914300.21794466951483696No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCGCCTGTAGGCAC2792410.20882917839615892No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCTGTAGGCACCATC2680440.20045555020222683No Hit
TTGGATAACTGTGGCAATTCCAGAGCTAATACATGCCTGTAGGC2594180.19400463327797407No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTCGGCTGTAGGCACCAT2389060.17866482247919446No Hit
CTCCGGGGCCGCGGGTGAGTGTCCTCCGCGCCCTGTAGGCACCA2374450.17757221992571276No Hit
CTCCGGGGCCGCGGGTGAGTGTCCTCCGCGCCCTCTGTAGGCAC2303550.1722699939817118No Hit
GCTTGCTCTCCGGGGCCGCGGGTGAGTGTCCTCCGCCTGTAGGC2232610.1669647766549498No Hit
CAACTCTTAGCGGTGGATCACTCGGCTCGTGCCTGTAGGCACCA2208730.16517892114658955No Hit
TGCTGCGATCCATTGAAAGTCAGCCCTCGATCCAACTGTAGGCA2133260.15953492972213607No Hit
GAGCGCCGCGACCGGCTCCGGTTCGGCTTGGAAGGCTGTAGGCA1931670.14445910845202112No Hit
CGCTTGCTCTCCGGGGCCGCGGGTGAGTGTCCTCCGCTGTAGGC1884780.1409524600103539No Hit
TGGATAACTGTGGCAATTCCAGAGCTAATACACTGTAGGCACCA1833670.13713022068739358No Hit
CTCCGGGGCCGCGGGTGAGTGTCCTCCGCGCCCCTGTAGGCACC1798520.13450154308610116No Hit
GCTGCGATCCATTGAAAGTCAGCCCTCGATCCCTGTAGGCACCA1674340.1252147953043517No Hit
GCTTGCTCTCCGGGGCCGCGGGTGAGTGTCCTCCCTGTAGGCAC1659180.12408106123790524No Hit
TTGGATAACTGTGGCAATTCCAGAGCTAATACCTGTAGGCACCA1650070.12339977381407097No Hit
TGCTGCGATCCATTGAAAGTCAGCCCTCGATCCACTGTAGGCAC1423150.10642965941050689No Hit
AAAGATTAAGCCATGCAAGTCTAAGTGCACACTGTAGGCACCAT1402610.10489358436269619No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)