FastQCFastQC Report
Tue 27 Jun 2023
SRR836195.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR836195.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123998678
Total Bases5.4 Gbp
Sequences flagged as poor quality0
Sequence length44
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCGGGGCCGCGGGTGAGTGTCCTCCGCGCCCCTGTAGGCACC26016832.0981538206399266No Hit
GGAGCGCCGCGACCGGCTCCGGTTCGGCTTGGACTGTAGGCACC17827501.4377169408209336No Hit
CTCCGGGGCCGCGGGTGAGTGTCCTCCGCGCCCTCTGTAGGCAC12743861.0277416022128882No Hit
GAGCGCCGCGACCGGCTCCGGTTCGGCTTGGAAGCTGTAGGCAC10632020.8574301090532594No Hit
CTCCGGGGCCGCGGGTGAGTGTCCTCCGCGCCCTGTAGGCACCA8305310.6697902053439634No Hit
GCTTGCTCTCCGGGGCCGCGGGTGAGTGTCCTCCCTGTAGGCAC3747750.3022411255061929No Hit
TCTCCGGGGCCGCGGGTGAGTGTCCTCCGCGCCCCTGTAGGCAC3707260.29897576811262455No Hit
GCTTGCTCTCCGGGGCCGCGGGTGAGTGTCCTCCTGTAGGCACC3511390.2831796319634956No Hit
GGAGCGCCGCGACCGGCTCCGGTTCGGCTTGGAACTGTAGGCAC2893320.23333474571398255No Hit
GAGCGCCGCGACCGGCTCCGGTTCGGCTTGGAACTGTAGGCACC2742750.22119187431982137No Hit
TCTCCGGGGCCGCGGGTGAGTGTCCTCCGCGCCCTCTGTAGGCA2229520.17980191692043684No Hit
GGAGCGCCGCGACCGGCTCCGGTTCGGCTTGGCTGTAGGCACCA1794920.14475315615864873No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCTGTAGGCACCATC1662300.13405788084289091No Hit
TCTCCGGGGCCGCGGGTGAGTGTCCTCCGCGCCCTGTAGGCACC1632800.13167882322100238No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCGCTGTAGGCAC1632760.13167559738015916No Hit
GCTTGCTCTCCGGGGCCGCGGGTGAGTGTCCTCTGTAGGCACCA1624340.13099655788265743No Hit
CGCCGCGACCGGCTCCGGTTCGGCTTGGAAGGGTCTGTAGGCAC1604500.12939654082441104No Hit
GCAGTTAAAAAGCTCGTAGTTGGATCTCGGCTGTAGGCACCATC1462120.11791416034290302No Hit
CGCTTGCTCTCCGGGGCCGCGGGTGAGTGTCCTCCCTGTAGGCA1404040.11323023943852045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)