FastQCFastQC Report
Tue 27 Jun 2023
SRR836196.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR836196.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122889739
Total Bases5.4 Gbp
Sequences flagged as poor quality0
Sequence length44
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGCGCCGCGACCGGCTCCGGTTCGGCTTGGACTGTAGGCACC18804051.5301562321651607No Hit
GGAGCGCCGCGACCGGCTCCGGTTCGGCTTGGAACTGTAGGCAC10708930.8714258885357385No Hit
CTCCGGGGCCGCGGGTGAGTGTCCTCCGCGCCCTCTGTAGGCAC9145920.7442378895442198No Hit
GAGCGCCGCGACCGGCTCCGGTTCGGCTTGGAAGCTGTAGGCAC8005080.6514034503726954No Hit
CTCCGGGGCCGCGGGTGAGTGTCCTCCGCGCCCCTGTAGGCACC6516900.5303046497641272No Hit
GCAGTTAAAAAGCTCGTAGTTGGATCTCGGCTGTAGGCACCATC6244330.508124604284496No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTCGGCTGTAGGCACCAT4728310.38476035822649113No Hit
GCTTGCTCTCCGGGGCCGCGGGTGAGTGTCCTCCGCTGTAGGCA4208850.34248994539731265No Hit
CTCCGGGGCCGCGGGTGAGTGTCCTCCGCGCCCTGTAGGCACCA4178250.3399999083731474No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCCTGTAGGCACCA3617990.29440944617841525No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCTGTAGGCACCATC3295450.26816315396357054No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCGCTGTAGGCAC3140700.2555705647645651No Hit
CCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTGTAGGCACCATC3127280.2544785289193266No Hit
GAGCGCCGCGACCGGCTCCGGTTCGGCTTGGAAGGCTGTAGGCA3003340.24439306523386792No Hit
GGAGCGCCGCGACCGGCTCCGGTTCGGCTTGGAAGCTGTAGGCA2844750.2314880008004574No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCCTGTAGGCACC2596410.21127964150041853No Hit
AAAGATTAAGCCATGCAAGTCTAAGTGCACACTGTAGGCACCAT2562050.208483639142565No Hit
GCTTGCTCTCCGGGGCCGCGGGTGAGTGTCCTCCCTGTAGGCAC2536980.20644359900544668No Hit
AGCGTTTACTTTGAAAAAATTAGAGTGTTCACTGTAGGCACCAT2207950.17966919109495383No Hit
CAACTCTTAGCGGTGGATCACTCGGCTCGTGCCTGTAGGCACCA2080550.16930217420349472No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCGCTGTAGGCACC2072740.16866664514601987No Hit
TGGATAACTGTGGCAATTCCAGAGCTAATACCTGTAGGCACCAT2068640.16833301273428533No Hit
CGCTTGCTCTCCGGGGCCGCGGGTGAGTGTCCTCCGCTGTAGGC1792480.14586083545998907No Hit
TCTCCGGGGCCGCGGGTGAGTGTCCTCCGCGCCCTCTGTAGGCA1710350.1391776086366332No Hit
CTTGGATAACTGTGGCAATTCCAGAGCTAATACTGTAGGCACCA1605570.13065126617284134No Hit
CCCCCGGCGCGGAGAGCCATTCGTGACAGGAACTGTAGGCACCA1345830.10951524602066248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)