FastQCFastQC Report
Tue 27 Jun 2023
SRR836197.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR836197.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences119219977
Total Bases5.2 Gbp
Sequences flagged as poor quality0
Sequence length44
%GC68

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGCGCCGCGACCGGCTCCGGTTCGGCTTGGACTGTAGGCACC7117080.596970422163393No Hit
GAGCGCCGCGACCGGCTCCGGTTCGGCTTGGAAGCTGTAGGCAC6121340.5134491847788227No Hit
GGAGCGCCGCGACCGGCTCCGGTTCGGCTTGGAACTGTAGGCAC4459780.37407992454150535No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCGCTGTAGGCAC4347410.3646544907486436No Hit
CGACCCACGTTCGGGCGCCCGAGGTCCGCGGCGACTGTAGGCAC4052280.33989941132097345No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCGCTGTAGGCACC3734770.3132671297193758No Hit
CTCCGGGGCCGCGGGTGAGTGTCCTCCGCGCCCCTGTAGGCACC3259810.273428168837845No Hit
TGGCGGCGTCCGGTGAGCTCTCGTCGGCCCTTGCTGTAGGCACC2901860.24340383826780976No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCGCTGTAGGCACCA2615880.2194162476646007No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCCTGTAGGCACCA2574050.2159076074976931No Hit
GCTTGCTCTCCGGGGCCGCGGGTGAGTGTCCTCCGCTGTAGGCA2503020.20994971337731427No Hit
GCTGCGATCCATTGAAAGTCAGCCCTCGATCCCTGTAGGCACCA2450330.20553015204825947No Hit
CTCCGGGGCCGCGGGTGAGTGTCCTCCGCGCCCTCTGTAGGCAC2415180.20258182066248848No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCCTGTAGGCACC2413280.20242245139839274No Hit
CTCCGGGGCCGCGGGTGAGTGTCCTCCGCGCCCTGTAGGCACCA2133780.17897839386431016No Hit
GTTGAACCCCGCCCGTGATGGGGACCGGGGATTGCTGTAGGCAC2116350.17751639056263196No Hit
GAGCGCCGCGACCGGCTCCGGTTCGGCTTGGAAGGCTGTAGGCA1849510.15513423559878728No Hit
GGAGCGCCGCGACCGGCTCCGGTTCGGCTTGGAAGCTGTAGGCA1796310.1506718962041068No Hit
TGCTGCGATCCATTGAAAGTCAGCCCTCGATCCCTGTAGGCACC1786580.14985575781481655No Hit
GGGGGCCGCCCCTGCTTCTGGCGTCAAGCGCCCCGGCTGTAGGC1607880.1348666591338128No Hit
AGCCCGTGGACGGTGTGAGGCCGGTGTCGGCCCCCCTGTAGGCA1466100.12297435688986921No Hit
GTTGAACCCCGCCCGTGATGGGGACCGGGGATTCTGTAGGCACC1366720.11463850559206197No Hit
CGTTGAACCCCGCCCGTGATGGGGACCGGGGATTGCTGTAGGCA1296080.10871332411010279No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)