FastQCFastQC Report
Tue 27 Jun 2023
SRR836198.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR836198.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences132835670
Total Bases5.8 Gbp
Sequences flagged as poor quality0
Sequence length44
%GC65

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCCGTGGACGGTGTGAGGCCGGTAACGGCCCCCGCTGTAGGC31294262.355862698626054No Hit
GCAGTTAAAAAGCTCGTAGTTGGATCTCGGCTGTAGGCACCATC28075912.1135821425073553No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCCTGTAGGCACCA13992391.0533608931998462No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAACGGCCCCCCTGTAGGCA11280260.8491890770001762No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTCGGCTGTAGGCACCAT11030070.8303545275150868No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAACGGCCCCCGCCTGTAGG9535040.7178071974191872No Hit
CCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTCTGTAGGCACCA8955070.6741464849012317No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCGCTGTAGGCACCA7849990.590954974669078No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCGCTGTAGGCACC7340750.5526188861771841No Hit
GCCCGTGGACGGTGTGAGGCCGGTAACGGCCCCCGCTGTAGGCA6093770.4587450042597745No Hit
CCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTGTAGGCACCATC5461110.411117736674193No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCGCTGTAGGCAC4909520.36959349849328876No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCCTGTAGGCACC4757340.35813723828848076No Hit
GTTGAACCCCGCTCGTGATTGGGACTGGGGCTCTGTAGGCACCA4231860.3185785866100574No Hit
GCAGTTAAAAAGCTCGTAGTTGGATCTCGGGCTGTAGGCACCAT3985470.30003010486565845No Hit
CGACCTCAGATCAGACGAGACAACCCGCTGACTGTAGGCACCAT3096970.23314295023317155No Hit
CTCCCGGGGCCACGCCTGTCTGAGCGTCGCTCTGTAGGCACCAT2810490.2115764538244886No Hit
CCTCGGTCGGTGCGGAGAGCCAGCCGTGACGGGCTGTAGGCACC2799160.2107235202713247No Hit
CGACCTCAGATCAGACGAGACAACCCGCTGAACTGTAGGCACCA2715840.204451108651765No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAACGGCCCCCTGTAGGCAC2710470.20404684976557877No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCGCCTGTAGGCA2639070.19867178747997433No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCGCCTGTAGGCAC2573920.19376723134682122No Hit
CTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGCTGTAGGCACCA2548200.19183100442825335No Hit
CGTTGAACCCCGCTCGTGATTGGGACTGGGGCTCTGTAGGCACC2394370.18025053059919824No Hit
GCCCGTGGACGGTGTGAGGCCGGTAACGGCCCCCCTGTAGGCAC2381210.17925983284459665No Hit
TGGATAACTGTGGCAATTCCAGAGCTAATACATGCCTGTAGGCA1931400.14539769325513244No Hit
GCCCGTGGACGGTGTGAGGCCGGTAACGGCCCCCGCCTGTAGGC1920020.144540995652749No Hit
CAACTCTTAGCGGTGGATCACTCGGCTCGTGCCTGTAGGCACCA1776900.13376678116653457No Hit
CCCCGAGAGAGGGGCCCGCGCCCTGGAAAGCGCCGCCTGTAGGC1740490.13102580052481386No Hit
GGGCCGGGGGTCTAAGTCCTTCTGATGGAGGCTCTGTAGGCACC1638240.12332831987070944No Hit
GTTGAACCCCGCTCGTGATTGGGACTGGGGCTTCTGTAGGCACC1547140.11647022219257826No Hit
GCTGCGATCCATTGAAAGTCAGCCCTCGATCCACTGTAGGCACC1515610.11409661275469157No Hit
GGGTCGGGGTGTCGTGCGTGGCAGAGCAGCCTGTAGGCACCATC1493550.11243591423899921No Hit
CCATCTAAGGCTAAATACCGGCACGAGACCGACTGTAGGCACCA1353920.10192443038831361No Hit
GCGCCGCGACCGGCTCCGGTTCGGCTTGGAAGGGCTGTAGGCAC1339850.1008652269379151No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)