FastQCFastQC Report
Tue 29 Aug 2023
SRR8392708_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR8392708_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences174567680
Total Bases13.1 Gbp
Sequences flagged as poor quality0
Sequence length51-81
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAAAA22701001.3004125391366834No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAAAAA20647061.1827538751732278No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAAAAA17281570.9899638925143531No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAAAAAAAAAA15397580.8820407076498926No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAAAA15355750.8796445023500341No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGAAAAAAAAAAAAAAAAAAA15143650.8674944869519948No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAAAAAA13969200.8002168557203716No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAAA13456840.7708666346485215No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAAAAA10981240.6290534421950272No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAAAAAAAAAA10618650.6082827015859981No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAACAAAAAAAAAAAAAAA10564670.6051904911607923No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAAAAAA10368140.5939323934419017No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAATGAAAAAAAAAAAAAAAAAAA10363990.5936946632962069No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAAAAAA9864800.5650988774096098No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAGTAAAAAAAAAAAAAAA8455300.48435655443206893No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAAAA8451050.48411309584912854No Hit
ACTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAAAA8353740.47853875356537934No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAACGAAAAAAAAAAAAAAAAAAA8161590.4675315613978486No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGTCAAAAAAAAAAAAAAAAAA7908230.4530179927922511No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAAAAA7621450.4365899804591548No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCAAAAAAAAAAA7531350.4314286585008175No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAATGGAACAAAAAAAAAAAAAAA7235280.41446847434759976No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCGAAAAAAAAAAAAAAAAA6621680.37931878340824604No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAA6340730.3632247389665716No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAAAAAAAA6321990.36215122982673537No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGTCAAAAAAAAAAAAAAAAA6251400.3581075259750259No Hit
AGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCAAAAAAAAAAA6138690.3516510043554454No Hit
TCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAAAA6040570.3460302617300064No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAAAAAAAAAAA6016660.3446605923845697No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCATAAAAAAAAAAAAAA5990840.343181509887741No Hit
ACTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAAAAAAAA5960500.34144350202740853No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGTAAAAAAAAAAAAAAAA5804500.332507139924183No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAAAAA5767230.33037215136272646No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAATGGAGTAAAAAAAAAAAAAAA5676720.325187342811682No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAAAAAA5507820.31551201230376663No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAACGAAAAAAAAAAAAAAAAAAA5428790.31098482834852365No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGAAAAAAAAAAAAA5361400.3071244344886751No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCACAAAAAAAAAAAAAAAA5286810.3028515931471393No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCTAAAAAAAAAAAAAAA5282620.3026115716265462No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGAAAAAAAAAAAAAAAAAAAA5200910.2979308655531196No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGACAAAAAAAAAAAAAAAAAA5183500.2969335446286506No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCTAAAAAAAAAAAAAAAAAA5039890.28870693590016205No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGACAAAAAAAAAAAAAAAAA4592810.263096238662277No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGTAAAAAAAAAAAAAAAAA4540020.26007219664029446No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCACAAAAAAAAAAAAAAAAA4470310.2560789030363467No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACTAAAAAAAAAAAAA4420940.25325077356816567No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAAAAAAAAAAA4418790.253127612167384No Hit
ACTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAAAAAAAAAAA4328660.247964571677873No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAACAAAAAAAAAAAAAAAA4254570.24372037252256545No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGAAAAAAAAAAAA4218060.24162892008417594No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCTAAAAAAAAAAAAAAAA4096540.23466772314325307No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCCAAAAAAAAAAAAAAA4022170.2304074843636577No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCGCAAAAAAAAAAAAAA4006120.22948807018572967No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCGAAAAAAAAAAAAAAAA3831160.21946559638072752No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAAAAA3777060.2163665118308269No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCATAAAAAAAAAAAAAAA3757950.21527180747318175No Hit
AGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGAAAAAAAAAAAA3749180.21476942352673759No Hit
ACGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAAAA3655600.20940875195225142No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAAAAA3643990.2087436803880306No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGAAAAAAAAAAAAAA3626170.20772287287085445No Hit
TTCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAAA3602000.20633830958857904No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTAAAAAAAAAAAAAAAAA3596870.20604444075787684No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCTAAAAAAAAAAAAAAAAA3486090.19969847797713758No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAAAA3326040.19053011416546292No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAGTAAAAAAAAAAAAAAAA3283500.18809323696116026No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAAAAAAAAAAAA3270450.18734567590060197No Hit
TCGCTGCGATCTATTGAAAGTCAGCCCTCGACGCAAAAAAAAAAAAAAAA3228070.18491796419589238No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACTAAAAAAAAAAAAAA2960820.16960871565687302No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACGCAAAAAAAAAAAAAAAAA2851970.16337331171497496No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGAAAAAAAAAAAAAAAAA2714730.15551160443903475No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCGAAAAAAAAAAAAAAA2664170.1526153065676304No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGTAAAAAAAAAAA2660540.15240736429561302No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAAAAAAAAAA2557640.14651280236983158No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGTAAAAAAAAAAAAAAAAAAA2521290.1444305154310351No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAAAA2473050.14166711730373No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCCAAAAAAAAAAAAAAAA2467760.1413640829734347No Hit
TTGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAAA2417640.13849299022591122No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCAAAAAAAAAAAAA2385730.13666504590082196No Hit
ACTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAAAAAAAAAA2338530.13396122352087167No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAACAAAAAAAAAAAAAAAAA2281250.13067997466655912No Hit
AGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCAAAAAAAAAAAAA2247940.12877183222003066No Hit
GCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAAAAAA2223230.1273563353766287No Hit
AGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGTAAAAAAAAAAA2214560.12685967986743021No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTAAAAAAAAAAAAAAAA2208450.12650967235172053No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAAA2101040.12035675790615995No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGTAAAAAAAAAAAAAAAAAA2095260.12002565423336095No Hit
GCCGCCTGGATACCGCAGCTAGGAATAACGAAAAAAAAAAAAAAAAAAAA2080370.11917268992748258No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAAAAAAAAAAA2076110.11892865850081757No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCGAAAAAAAAAAAAAAAA2047800.11730693791657196No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCACAAAAAAAAAAA2042020.11697583424377296No Hit
ATTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAAAAAA2009650.11512153910735365No Hit
ACGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAA2004230.11481105780863904No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGAAAAAAAAAAAAAAAAAA2002790.11472856831230156No Hit
TCGCTGCGATCTATTGAAAGTCAGCCCTCGACACGAAAAAAAAAAAAAAA1971170.1129172364552247No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCGCAAAAAAAAAAAAAAA1961220.11234725694928178No Hit
TTGCCGCCTGGATACCGCAGCTAGGAATAATGAAAAAAAAAAAAAAAAAA1958330.1121817051128823No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTAAAAAAAAAA1891840.1083728671882447No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGTAAAAAAAAAAAAAAAAAA1873140.10730164942330676No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGTCAAAAAAAAAAAAAAAAAAA1857140.10638509946400158No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCATAAAAAAAAAAAAAAAA1857030.10637879818303135No Hit
TTGCCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAAAAAAAAA1855830.10631005693608347No Hit
AGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAAA1850540.1060070226057882No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGCAAAAAAAAAAAAAAAAAA1830920.10488310321819022No Hit
TTCGCTGCGATCTATTGAAAGTCAGCCCTCGACGCAAAAAAAAAAAAAAA1810110.10369101542736892No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAAAAAAA1790330.1025579305401779No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCAAAAAAAAAAAAAAAAAA1780080.10197076572249801No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAGTAAAAAAAAAAAAAAAAA1777720.10183557460350048No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACGAAAAAAAAAAAAAAAA1758710.10074659868310103No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAAAA1754210.10048881900704644No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)