FastQCFastQC Report
Tue 11 Jul 2023
SRR8392709_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR8392709_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47269841
Total Bases2.6 Gbp
Sequences flagged as poor quality0
Sequence length50-76
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAAAAA23984795.074015374834876No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAAAAA22395734.737847542156954No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAAAAAA9313671.9703197224632085No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAAAAAA8657951.8316012529003431No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCATAAAAAAAAAAAAAA4697730.993811254833711No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAAAAAAA4366770.9237962107805694No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAAAAAAA3345230.7076880161285078No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGAAAAAAAAAAAAA2990800.6327078612343968No Hit
CGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGAAAAAAAAAAAAAAAAAA2885360.6104018839411793No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCAAAAAAAAAA2575340.5448167257427415No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAAAAA2481860.5250409029300521No Hit
TCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAAAA2316460.490050305013719No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAAAAA2225110.4707250866361069No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAAAAA2149290.4546852611583779No Hit
CGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGAAAAAAAAAAAAAAAAA2053340.4343869064421012No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAAAAA1974640.4177378129958169No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCACAAAAAAAAAAAAAAAA1957680.41414990162543597No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGAAAAAAAAAAAAAAAAA1947600.4120174637354926No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGTAAAAAAAAAAAAAAAA1756570.3716048040017736No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACTAAAAAAAAAAAAA1702150.36009217801261484No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAAAAAAAAAAA1526910.3230199145370512No Hit
TTCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAAA1454310.30766128449638747No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCATAAAAAAAAAAAAAAA1442350.3051311300158594No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCGCAAAAAAAAAAAAAA1411720.2986513113086206No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAGAAAAAAAAAAAAAA1332550.2819027887146902No Hit
TGGACGGTGTGAGGCCGGTAGCGGCCCCCGAAAAAAAAAAAAAAAAAAAA1216370.25732474962206875No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAAAAA1200490.253965313739896No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCTAAAAAAAAAAAAAAA1200020.25386588459224985No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGAAAAAAAAAAAAAAAAAAAA1095650.23178626727346088No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAAAAAAAAAA1069810.22631977966670122No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGAAAAAAAAAAAAAA1058010.22382347340664843No Hit
TTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAAAAAAAAAAA1033990.21874200930779522No Hit
TGGACGGTGTGAGGCCGGTAGCGGCCCCCGGAAAAAAAAAAAAAAAAAAA1027540.217377502919885No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAAAAAAAAA1013680.21444540082121286No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCCAAAAAAAAAAAAAAA965380.20422746926523405No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAAAAA872000.1844728015903417No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCACAAAAAAAAAAAAAAAAA839600.17761853694409507No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGAAAAAAAAAAAAAAAAAAA793920.16795486999839918No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAAAA790690.16727155904755422No Hit
TGGACGGTGTGAGGCCGGTAGCGGCCCCCGAAAAAAAAAAAAAAAAAAAT747330.1580986912987501No Hit
GTGGACGGTGTGAGGCCGGTAGCGGCCCCCGAAAAAAAAAAAAAAAAAAA695710.14717840916790897No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGAAAAAAAAA685220.14495923521299764No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAAAAAAAAAA660080.13964083357081739No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCACACAAAAAAAAAAAAAA653720.13829536680692453No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGTAAAAAAAAAAAAAAAAA631100.1335100746372301No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGAAAAAAAAAAAAAAAAAA630650.13341487651714334No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACTAAAAAAAAAAAAAA629450.13316101486357868No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGAAAAAAAAAAAAAA624000.13200805985363903No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGAAAAAAAAAAAAAAAAAAAT618040.1307472136409344No Hit
TTTTGGTGACTCTAGATAACCTCGGGTCGATCGCACAAAAAAAAAAAAAA610090.12906538018606833No Hit
TGGATAACTGTGGTAATTCTAGAGCTAATACATGAAAAAAAAAAAAAAAA574950.1216314647641823No Hit
TTTTGGTGACTCTAGATAACCTCGGGTCGATCGCAAAAAAAAAAAAAAAA566020.11974231095890507No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCATAAAAAAAAAAAAAAAA565540.11964076629747919No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCGAAAAAAAAAAAAAAA559870.11844126998438603No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAAAAAAAA555180.11744909402170403No Hit
GCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAAAAAA539930.11422293550765275No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCATAAAAAAAAAAAAAA530680.11226608526142492No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCGCAAAAAAAAAAAAAAA510630.1080244801331149No Hit
GTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGAAAAAAAAAAAAAAAAAA506790.10721212284170789No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAAAAA502440.1062918743475359No Hit
TGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGAAAAAAAAAAAAAAAAAA492360.10415943645759249No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGAAAAAAAAAAAAAA475800.10065614563839977No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)