FastQCFastQC Report
Fri 14 Jul 2023
SRR8392712_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR8392712_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122158001
Total Bases8.9 Gbp
Sequences flagged as poor quality0
Sequence length51-81
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAAA23360221.9122955360083211No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGTCAAAAAAAAAAAAAAAAAA15507331.2694485725908367No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAAAAAA15134991.2389683750637013No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGAAAAAAAAAAAAAAAAAAA13165251.0777231038677524No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAAAAAAAAAA11959490.9790181487989478No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAAAA11537290.9444563520648966No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAAAAA10673910.8737790331064766No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCGAAAAAAAAAAAAAAAAA10038980.8218029042567585No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAAAAAAAA9702070.7942230488856804No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAAAAA9287420.7602793041775463No Hit
ACTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAAAA9252080.7573863295290826No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCTAAAAAAAAAAAAAAAAAA7985680.6537173115660267No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAAAA7774130.6363995756610327No Hit
ACTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAAAAAAAA7569650.6196605984081223No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAA7545840.6177114833436084No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAATGAAAAAAAAAAAAAAAAAAA7537150.617000109554838No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGAAAAAAAAAAAAAAAAAAAA6878490.5630814145362447No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAAAAAAAAAA6823180.5585536718139322No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTAAAAAAAAAAAAAAAAA6571910.5379844092242472No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAAAAAAAAAAA6455160.528427114651295No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGACAAAAAAAAAAAAAAAAAA5849720.47886507245644927No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAAAA5820440.47646817665262875No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAAAAA5557830.4549706081061362No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAAAAA5332260.43650517824043306No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAACAAAAAAAAAAAAAAA4978390.40753695699391806No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAAAAA4911490.4020604430159265No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAAAAA4642250.38002013474336405No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGTCAAAAAAAAAAAAAAAAA4571170.3742014409682424No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAAAAAA4540490.37168993949074197No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAAAA4523360.37028765721207246No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAAAA4365630.35737569084811727No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAGTAAAAAAAAAAAAAAA4328490.3543353660477794No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAACGAAAAAAAAAAAAAAAAAAA4071630.33330849937532947No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGTCAAAAAAAAAAAAAAAAAAA3877030.3173783107338176No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAAAAA3280170.26851863759623895No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCGAAAAAAAAAAAAAAAA2982890.2441829414022582No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAACAAAAAAAAAAAAAAAA2976010.2436197363773168No Hit
TCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAAAA2966060.24280521748223433No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAATGGAACAAAAAAAAAAAAAAA2899560.23736144798243713No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAAA2888030.2364175883984873No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAAAAAAA2862270.23430884400277638No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAAAAAA2850710.23336252858296203No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCGAAAAAAAAAAAAAAAAAA2600520.21288167608440153No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCAAAAAAAAAAAAA2564620.2099428591664659No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAAAA2555010.2091561730778486No Hit
ACCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAAAA2526030.20678383563267377No Hit
TTCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAAA2525680.2067551842142538No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAAAAAAAAAAA2515580.20592838613984848No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGAAAAAAAAAAAA2502300.20484126946379877No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCTAAAAAAAAAAAAAAAAA2501510.2047765991193651No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAATGGAGTAAAAAAAAAAAAAAA2477130.2027808231734244No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCTAAAAAAAAAAAAAAAAAA2472490.20240098722637084No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAGTAAAAAAAAAAAAAAAA2450760.2006221434484672No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCTAAAAAAAAAAAAAAAAAAA2390130.19565889916617085No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAAAAAAAAAAA2389980.19564661998684804No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAAAAAAAA2366030.19368604435496614No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAAAAAAAAA2350200.19239018163042795No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAAAAA2324280.19026833944343932No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAACGAAAAAAAAAAAAAAAAAAA2262650.18522323396565732No Hit
ACGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAA2247500.18398303685404938No Hit
AGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAAA2224300.18208385711878178No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGTAAAAAAAAAAAAAAAAAAA2204130.18043271680583575No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAAAAA2193970.1796010070597013No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCAAAAAAAAAAA2023080.1656117473631547No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTAAAAAAAAAAAAAAAA2014580.16491592720152648No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCACAAAAAAAAAAAAAAAAAAA2011090.1646302316292815No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGTCAAAAAAAAAAAAAAAAAA1923540.15746328396451084No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGACAAAAAAAAAAAAAAAAA1905460.15598323355012989No Hit
ACTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAAAAAAAAAAA1884630.15427806484816334No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGAAAAAAAAAAAAAAAAAAAT1821470.14910771174128823No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAAAAAA1815130.14858871176190908No Hit
TCGGGCCGCCGGTGAAATACCACTACTCTGAAAAAAAAAAAAAAAAAAAA1769650.14486566459122066No Hit
AGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCAAAAAAAAAAAAA1768690.14478707784355443No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCATAAAAAAAAAAAAAAAA1761970.1442369706098907No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAAAAA1616250.13230815720371847No Hit
ACGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAAAAA1582750.12956580715494845No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCGCAAAAAAAAAAAAAA1568740.12841893180619418No Hit
AGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGAAAAAAAAAAAA1543950.12638959277010434No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATCTAAAAAAAAAAAAAAAAAAA1486050.1216498295514839No Hit
ACGTGGGGGGCCCAAGTCCTTCTGATCGAGGTCAAAAAAAAAAAAAAAAA1484720.12154095416148797No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAAAAA1446800.11843677762867125No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGACAAAAAAAAAAAAAAAAAAA1437460.11767219406283508No Hit
AGTGGGGGGCCCAAGTCCTTCTGATCGAGGTCAAAAAAAAAAAAAAAAAA1426190.11674961838971153No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAAAAAAAAAA1415340.11586142441869199No Hit
GCCGCCTGGATACCGCAGCTAGGAATAACGAAAAAAAAAAAAAAAAAAAA1409450.11537926197728136No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAAAAAAAAAA1387020.11354311536253772No Hit
GCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAAAAAA1372500.11235449080408577No Hit
AGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAAAAAA1370300.11217439617401728No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGTAAAAAAAAAAAAAAAAAA1360510.11137297507021256No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTAAAAAAAAAAAAAAAAAAAA1302050.10658736958212012No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGAAAAAAAAAAAAA1285250.10521210149796083No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGAAAAAAAAAAAAAAAAAAAA1267180.10373286969553473No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCGAAAAAAAAAAAAAAAAA1263990.10347173248193542No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)