FastQCFastQC Report
Fri 14 Jul 2023
SRR8730290_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR8730290_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36589695
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length10-290
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT400183010.937041153253668No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT16626684.544088164714136No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC10757412.940010841850417No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT8299332.268215135436357No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGA6149431.6806453292381913No Hit
CCCGGATAGCTCAGTCGGTAGAGCATCAGA6061761.6566850311269334No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC5131051.4023210633485739No Hit
CGACTGCATAATTTGTGGTAGTGGGG4278361.169280039092974No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGA4247611.1608760335389514No Hit
GCAGAGTGGCGCAGCGGAAGCGTGCTGGGC3964171.0834115999053833No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGC3963441.0832120901800357No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC3627610.9914294174903616No Hit
CGACTGCATAATTTGTGGTAGTGGGGG3559180.9727274304964827No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC2798420.7648109665849907No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT2739490.7487053390305658No Hit
CCGGATAGCTCAGTCGGTAGAGCATCAGA2040170.5575804881675018No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG1775000.4851092636874946No Hit
GCAGAGTTGCGCAGCGGAAGCGTGCTGGGC1755290.47972250110311115No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGA1706290.4663307524154No Hit
CCCGGCTAGCTCAGTCGGTAGAGCATGAGA1659630.45357852805277554No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG1657740.453061989174821No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGG1590050.43456224491622575No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG1586390.4335619632795518No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCC1514450.41390068979804284No Hit
CGCCGCGGCCCGGGTTCGATTCCCGGTCAGGG1363230.37257211354180464No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC1252470.34230129548770494No Hit
CCCGGCTAGCTCAGTCGGTAGAGCATGG1177610.3218419831048059No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGG1126340.30782984116156203No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC997840.2727106634805237No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC968620.26472480844674984No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGG958900.26206832278869774No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT941420.257291021420102No Hit
CGACTGCATAATTTGTGGTAGTGGGGGA934170.25530958921630803No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG925780.25301659387977954No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCA909980.24869843818047677No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAG847640.2316608542377847No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT843670.23057584929308647No Hit
CCAGGCGGCCCGGGTTCGACTCCCGGTGTGGG837130.22878846079476747No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC822180.22470261094004748No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG794780.2172141637146743No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGC793540.21687527048257715No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT789450.21575746941864368No Hit
CGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGA763730.20872816786256349No Hit
CCCGGCTAGCTCAGTCGGTAGAGCATGGGA740390.202349322671315No Hit
CCCGGATAGCTCAGTCGGTAGAGCATCA737380.20152668668049845No Hit
CCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGA727230.19875268159518683No Hit
CGTGGGGGGGCCGGGCCACCCCTCCCACGGCGC726650.19859416701888336No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCG724710.19806396309124738No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC719090.19652801150706503No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG677980.18529260765906905No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGA641650.17536358256060894No Hit
CGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG633790.1732154367507026No Hit
CCGGCTAGCTCAGTCGGTAGAGCATGAGA612660.16744058675536924No Hit
CCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGA596250.16295571744995416No Hit
CCCGGCTAGCTCAGTCGGTAGAGCATGAG595110.16264415431721965No Hit
GCAGAGTCGCGCAGCGGAAGCGTGCTGGGC590140.16128584837889468No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG577760.1579023820777954No Hit
GCGCGCGGGTCGGGGGGCGGGGCGGACTGT573630.15677364897411689No Hit
CCGGCTAGCTCAGTCGGTAGAGCATGG568930.15548913430407113No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATG559380.1528791098149356No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCT544850.14890804637753882No Hit
TCCGGGGCTACGCCTGTCTGAGCGTCGCT538030.14704413360100432No Hit
CAGAGTGGCGCAGCGGAAGCGTGCTGGGC536610.14665604619005432No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCC528330.14439311396282478No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAG524040.14322065270016598No Hit
CCCGCGAGGGGGGCCCGGGC493470.13486584132499602No Hit
CTTCCGGGGCTACGCCTGTCTGAGCGTCGCT488460.13349660334692595No Hit
CCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGG487810.13331895770106855No Hit
CCCGGCTAGCTCAGTCGGTAGAGCATGA485800.1327696227038788No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC477330.13045476328786013No Hit
ACTGCATAATTTGTGGTAGTGGGGG474330.12963486030697988No Hit
CGCGCGGGTCGGGGGGCGGGGCGGACTGT467370.12773268539133764No Hit
TCGACTGCATAATTTGTGGTAGTGGGG438000.11970583520851978No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGG431340.11788565059096558No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC418570.11439559690235189No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT418410.1143518687433716No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGC418090.11426441242541105No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCT412980.1128678443479783No Hit
GCATAATTTGTGGTAGTGGGG407740.1114357471413741No Hit
CCCGGCTAGCTCAGTCGGTAGAGCATG397850.10873280031440546No Hit
CCAGGCGGCCCGGGTTCGACTCCCGGTGTGG396290.10830645076434772No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG396090.10825179056562237No Hit
GCAGAGTGGCGCAGCGGAAGCGTGCTGGG395380.10805774686014737No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGC389080.10633595060029881No Hit
CTGGCAATTTTTGACAGTCTCTACGGAGACTG388930.1062949554512548No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGC380900.10410034847243192No Hit
CGCCCGGCTAGCTCAGTCGGTAGAGCATGGGA379510.10372046009129073No Hit
GGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC376990.10303174158735129No Hit
GACCGCCTGGGAATACCGGGTGCTGTAGGCTT374410.10232662502379426No Hit
GCAGAGTAGCGCAGCGGAAGCGTGCTGGGC370200.10117602784062561No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)