FastQCFastQC Report
Fri 14 Jul 2023
SRR8763547_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR8763547_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1727144
Total Bases88 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGACATTCGTCGCTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1081686.2628246399836955No Hit
AGGACATTCGTCGCTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT827404.7905675496658064No Hit
GGACATTCGTCGCTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT446172.5832819961740308No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGAACTATCTCGTAT140390.8128447888537378TruSeq Adapter, Index 12 (97% over 39bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA99980.5788747203475796No Hit
GAAGAGCACACGTCTGAACTCCAGTCACCTTGAACTATCTCGTATGCCGT48310.2797103194638085TruSeq Adapter, Index 12 (97% over 34bp)
GACATTCGTCGCTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT43470.251687178370767No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGAACTATCTCGTATG38750.22435882589986705TruSeq Adapter, Index 12 (97% over 38bp)
CAGGACATTCGTCGCTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA26530.15360618454512187No Hit
AGGACATTCGTCGCTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA18630.10786593358747157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)