FastQCFastQC Report
Fri 14 Jul 2023
SRR8763610_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR8763610_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1857259
Total Bases94.7 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTGGATAATCTCGTATG95010.5115603154971924TruSeq Adapter, Index 12 (97% over 36bp)
CGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGA62700.3375942719889902No Hit
CCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGA54010.2908048904326214No Hit
CTCGGTTGATTTCCCTTCCTTTAGCTACTAAGATGTTTCAGTTCGCTAAG51270.2760519669039159No Hit
CCCAGGCGGAGTGTTTCACGCGTTAGCTGGGCCCCTGATCCGCGTAGACC47100.25359952489125104No Hit
GGGGTCTCGGTTGATTTCCCTTCCTTTAGCTACTAAGATGTTTCAGTTCG45120.2429386531442303No Hit
GTCTCGGTTGATTTCCCTTCCTTTAGCTACTAAGATGTTTCAGTTCGCTA40450.21779407180150964No Hit
GCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGG39950.21510193247145393No Hit
GCGGAGCTTAGAGCCTTTACTTTATGTAAAGCGCACTCACTCTAACGGCG38300.20621787268226993No Hit
GGTTGATTTCCCTTCCTTTAGCTACTAAGATGTTTCAGTTCGCTAAGTTT38040.20481796023064094No Hit
CCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAG37980.2044949035110343No Hit
GCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCTCATTTCGCCTTACC37110.1998105810767373No Hit
GGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGAT31910.17181233204415755No Hit
GCTGACATGAGTAACGAAAAATCCTGTGAAAAACACGATCGCCTGCCAGT29820.16055918964452454No Hit
CCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGT29330.1579208931010699No Hit
CTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAGCGGC28880.15549796770401975No Hit
GGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCA28790.1550133826246097No Hit
GTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAACGCC28670.15436726918539634No Hit
GGCCCGGGTACATATTCACCGCGGCATGCTGATCCGCGATTACTAGCGAT27630.1487676193788804No Hit
GCCAAATCCTGAAGAAAGCTAAAAAGCGCTGTTTGATGAGCCTGCGTAGT27180.14634469398183023No Hit
GGCCGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGA26940.14505246710340344No Hit
GATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCT26330.14176805712073545No Hit
CCCTGATACATTTTCGGTGCCATGGAGCTAGACCAGTGAGCTATTACGCT25550.1375683197658485No Hit
GGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGATACCGTCTGTGAT25390.13670683518023066No Hit
CCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTG24450.13164561323972584No Hit
GGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAA24440.13159177045312473No Hit
GCTCTACTGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTT24180.13019185800149574No Hit
GCCGAGTGACGTGCCAGCGCTACTAATTGAGTGCCAGCACCTAGCTGTGC24170.13013801521489465No Hit
CTGGAAGTTTCAACCTTGTTGACTATGACAACAGTCGCGACTATAAACAG23980.12911500226947345No Hit
ACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGT23630.12723050473843445No Hit
CCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTG23510.12658439129922106No Hit
GGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACATACGTG23500.12653054851261994No Hit
GCGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAG23090.12432299426197423No Hit
GTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACG22500.12114626985250845No Hit
CACGCGTTAGCTGGGCCCCTGATCCGCGTAGACCAAGGGCGAACACTCAT22450.12087705591950289No Hit
ATCAGAAGTGAGAATGCTGACATGAGTAACGAAAAATCCTGTGAAAAACA22030.11861565888225606No Hit
CTGGGCTGTTTCCCTCTCGACTTTGGATCTTAGCACCCAAAAAGTCTGTC21620.11640810463161035No Hit
GTCGCGAGAGAGCAGAGCGTACCGCCCTGCCATAGTCACGAGTCTGTTTA21540.11597736233880142No Hit
GTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGCGTAATGGTATA21120.11371596530155459No Hit
CAAATCCTGAAGAAAGCTAAAAAGCGCTGTTTGATGAGCCTGCGTAGTAT21050.11333906579534679No Hit
GCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC20990.1130160090757401No Hit
GGACGCTTTCAGAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCAT20980.112962166289139No Hit
CCCCAGGCGGAGTGTTTCACGCGTTAGCTGGGCCCCTGATCCGCGTAGAC20970.11290832350253788No Hit
CTGCAAGATAAGGCCAAAAACTTGACTTTACTAAACAAGCGAGAAAGGCC20720.11156225383751No Hit
AGCGGAGCTTAGAGCCTTTACTTTATGTAAAGCGCACTCACTCTAACGGC20600.11091614039829663No Hit
GTGAAATCCGGAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCT20440.11005465581267879No Hit
GTCACCTGCAAGATAAGGCCAAAAACTTGACTTTACTAAACAAGCGAGAA19800.10660871747020745No Hit
GCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCAT19620.10563954731138737No Hit
GGAGCTTAGAGCCTTTACTTTATGTAAAGCGCACTCACTCTAACGGCGTA19580.10542417616498292No Hit
GTCTGTACAAACGATCTAGGCCTGTATTCGGAGTTTCCCTGGGGTTGGTA18790.10117059602349483No Hit
CGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGA18780.10111675323689372No Hit
CCCGGCGTACCTTTGATCCGTTGAGCGAGAGCCCTTCCACACGGGACTCC18760.10100906766369148No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)