FastQCFastQC Report
Fri 14 Jul 2023
SRR8763611_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR8763611_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6948286
Total Bases347.4 Mbp
Sequences flagged as poor quality0
Sequence length50
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTGGATAATCTCGTATG342670.4931719851485676TruSeq Adapter, Index 12 (97% over 36bp)
CGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGA241530.3476109072079071No Hit
CTCGGTTGATTTCCCTTCCTTTAGCTACTAAGATGTTTCAGTTCGCTAAG210960.3036144453466654No Hit
CCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGA201470.2899564007584029No Hit
GGGGTCTCGGTTGATTTCCCTTCCTTTAGCTACTAAGATGTTTCAGTTCG181530.26125867588064167No Hit
CCCAGGCGGAGTGTTTCACGCGTTAGCTGGGCCCCTGATCCGCGTAGACC162450.23379866631857124No Hit
GTCTCGGTTGATTTCCCTTCCTTTAGCTACTAAGATGTTTCAGTTCGCTA158360.22791232254976262No Hit
GGTTGATTTCCCTTCCTTTAGCTACTAAGATGTTTCAGTTCGCTAAGTTT158060.2274805613931263No Hit
GCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGG149370.21497387988922734No Hit
CCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAG143700.20681359402880076No Hit
GCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCTCATTTCGCCTTACC141220.20324436846727378No Hit
GGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCA135480.1949833383369654No Hit
GCGGAGCTTAGAGCCTTTACTTTATGTAAAGCGCACTCACTCTAACGGCG125890.18118137336315748No Hit
GGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGAT122560.17638882452449423No Hit
GATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCT117040.16844441924238582No Hit
GGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAA113920.16395410321336804No Hit
CTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAGCGGC102600.14766231556962395No Hit
CCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGT101890.1466404808322513No Hit
GTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAACGCC101120.1455322938635514No Hit
GGCCCGGGTACATATTCACCGCGGCATGCTGATCCGCGATTACTAGCGAT100400.1444960670876242No Hit
GCCAAATCCTGAAGAAAGCTAAAAAGCGCTGTTTGATGAGCCTGCGTAGT97110.13976108640317916No Hit
GCTGACATGAGTAACGAAAAATCCTGTGAAAAACACGATCGCCTGCCAGT96020.13819235420073384No Hit
GGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGATACCGTCTGTGAT94540.13606233249466126No Hit
CCCTGATACATTTTCGGTGCCATGGAGCTAGACCAGTGAGCTATTACGCT90920.13085241453791627No Hit
CCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTG88210.12695217208963477No Hit
GGACGCTTTCAGAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCAT86920.12509559911609855No Hit
ACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGT86340.124260860879935No Hit
GCTCTACTGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTT85740.12339733856666234No Hit
GGCCGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGA84640.12181421432566246No Hit
GGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAG84500.12161272578589885No Hit
CTGGAAGTTTCAACCTTGTTGACTATGACAACAGTCGCGACTATAAACAG83850.12067724327985346No Hit
CCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTG83620.12034622639309897No Hit
GTCGCGAGAGAGCAGAGCGTACCGCCCTGCCATAGTCACGAGTCTGTTTA83480.12014473785333533No Hit
GTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACG82540.11879188622920818No Hit
GGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACATACGTG80910.11644598394481746No Hit
GCCGAGTGACGTGCCAGCGCTACTAATTGAGTGCCAGCACCTAGCTGTGC78230.11258891761219961No Hit
CTGGGCTGTTTCCCTCTCGACTTTGGATCTTAGCACCCAAAAAGTCTGTC77410.111408770450727No Hit
GTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGCGTAATGGTATA76940.11073234463866341No Hit
GCGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAG76140.10958098155429986No Hit
CACGCGTTAGCTGGGCCCCTGATCCGCGTAGACCAAGGGCGAACACTCAT76000.10937949301453626No Hit
GGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCC74970.10789711304341819No Hit
GGTCATTGAGGAATACTTAGGCTTAGAGGGTGGTCCCCCTTTCTCGCGTA74950.1078683289663091No Hit
CAAATCCTGAAGAAAGCTAAAAAGCGCTGTTTGATGAGCCTGCGTAGTAT74060.10658743753495467No Hit
CCCCAGGCGGAGTGTTTCACGCGTTAGCTGGGCCCCTGATCCGCGTAGAC73610.10593979580000017No Hit
GTGAAATCCGGAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCT73600.10592540376144562No Hit
GCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC73430.10568073910601837No Hit
CCTTCCTTTAGCTACTAAGATGTTTCAGTTCGCTAAGTTTGAAAAGTCCA71750.10326287662885494No Hit
ATCAGAAGTGAGAATGCTGACATGAGTAACGAAAAATCCTGTGAAAAACA70540.1015214399637551No Hit
CGGTCATTGAGGAATACTTAGGCTTAGAGGGTGGTCCCCCTTTCTCGCGT70510.10147826384809144No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)