FastQCFastQC Report
Sat 30 Sept 2023
SRR9047190_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9047190_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87180717
Total Bases2.6 Gbp
Sequences flagged as poor quality0
Sequence length25-35
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGATCCCATGTAGACCACATGGTTGAT8927911.0240693478123148No Hit
ATTGCACTCCGGATGTGCTGACCCCTGCGA4570710.5242799276358326No Hit
ATTGCACTCCGGATGTGCTGACCCCTGCG4509920.5173070554122651No Hit
ATGTACACGGAGTCGACCCAACGCGA3664890.42037851099572854No Hit
AACTGCCTGTACCTAGAACGAACACACGTGGTC3454460.3962412926702587No Hit
ATATGACTCCACGCTTCCAAGAAAAGCTT3364240.3858926739499057No Hit
AAGACGAGGCCGACAGGCGTAGTCGATGGACAAC2621840.3007362281730259No Hit
AGGGGAGCGTTCCAAGGGTGATGAAGTC2605360.29884590189823745No Hit
TTGTATAGTAGAAGCTATTGGGAAGTAGCGGCAT2580170.29595650148185865No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2556910.2932884802954764No Hit
ACCCCGAGAGGGGAGTGAAAGAGATCCTGAAACC2534720.2907431926718382No Hit
TAGTCCGCCGAGGGCGCACCACCGGCCCGTCTCG2358370.27051509567190185No Hit
AAGACGAGGCCGACAGGCGTAGTCGATGGAC2300130.2638347193221639No Hit
AGCTAGGATGTTGGCTTAGAAGCAGCCATC2297170.2634951946999931No Hit
TATGCTCGTGAGGGAAACAGCCCAGATCGTC2177620.24978229990927928No Hit
TTTGTATAGTAGAAGCTATTGGGAAGTAGCGGCAT2149950.24660843291756823No Hit
AAGGTTTCCTGGGCAAGGTTCGTCCACCCAGGGTT2081620.2387706905415793No Hit
ATCGCATGATGAGTAATAGAAAGGAGCTT2025860.23237478076717355No Hit
TAGTCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1979060.22700662120041984No Hit
TGGTTCACTATGAGATGGGGATGCGGCGT1955160.2242651892849195No Hit
CGTTGAAGTGTGATGGGGAGTGAACGGTTCGCCT1766240.20259525968339995No Hit
AGAGGGTGATACCCCCGTATACGAAATGCAAT1756800.20151245142890944No Hit
TAAACTCAAAGGAATTGACGGGGACCCGCAC1734560.19896142859205895No Hit
AAGGACTGGTGGAGCGCTTGGAAGTGATT1691740.19404979199700778No Hit
TTGTATAGTAGAAGCTATTGGGAAGTAGCGGC1669100.19145288745445854No Hit
AGTCAGGACCTAAGACGAGGCCGACAGGCGT1614880.185233622246993No Hit
TGCGCCCGATCTCGTCTGATCTCGGAAGCTAAGC1588600.18221919418258511No Hit
ACGTAGCCGAACTGAGAGGTTGATCGGCCAC1566260.17965670091930994No Hit
AACACGAAGAACCTTACCAGGGCTTGACATCC1538750.17650118660987843No Hit
TGTATAGTAGAAGCTATTGGGAAGTAGCGGCAT1416050.1624269733867869No Hit
TGGTTCACTATGAGATGGGGATGCGGCGTATT1321410.15157136181846267No Hit
GTTTCCTGGGCAAGGTTCGTCCACCCAGGGTT1282840.14714721834646072No Hit
AACTCCGTAACTTCGGAAGAAGGAGTGCTCA1278370.1466344902852772No Hit
AACTAGACGGAAAGACCCCGTGGAGCTTTACT1273460.14607129234782504No Hit
AAATAGCGAGAAGATAGCAAGCTGCCAGT1256070.14407658519257188No Hit
TTTGTATAGTAGAAGCTATTGGGAAGTAGCGGC1252270.14364070898843376No Hit
AAATAGCGAGAAGATAGCAAGCTGCCAGTT1247470.14309012852004876No Hit
ATGTACACGGAGTCGAGCTCAACCCGCAACGCGA1241460.14240075589192505No Hit
AGGAGCGGTAGTTCAGTCGGTTAGA1232810.1414085640061896No Hit
AAAACTCAAAGGAATTGACGGGGACCCGCAC1227100.14075360265733994No Hit
AGTTGGTCCGAGTGTTGTGGGTTATTGTTA1215130.13938059261430485No Hit
TCGCCGCGACCGGCTCCGGGACGGCTGGG1197850.13739850292811884No Hit
TAAAATGAGAGTTTGATCCTGGCTCAGGATAAAC1193540.1369041275492148No Hit
AAAAGATTAAGCCATGCATGTCTAAGTACGCA1189780.13647283951564657No Hit
TAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCT1186180.13605990416435781No Hit
AGGATGTTGGCTTAGAAGCAGCCATCATTT1163320.13343776468367427No Hit
ACAAGTGGTGGAGCATGTGGTTTAATTCGA1142540.13105421007262422No Hit
ATAGAGGTCACACCTGTTACCATACCGAACAC1141970.13098882864200348No Hit
AGCTAACGCATTAAGTACTCCGCCTGAGTAG1136700.13038433716942244No Hit
TGATGAAGAACGCAGCTAGCTGCGAGAATT1128410.12943343881881586No Hit
AAGTGGTGGAGCATGTGGTTTAATTCGA1121570.12864886165136724No Hit
AGTAGGTGAGGTAATGGCTCACCTAGGCGATGAT1115810.12798816508930524No Hit
AGTACCGGTGAAGATGCCGGTTACCCGCAACT1109120.12722079356149366No Hit
AGAATTAAACTCCGAATGCCATAACTTGTGCAT1107240.1270051495447095No Hit
AGTGGCGAGCGAACACGGAACAGGCCAAACCG1106060.1268697985128982No Hit
TAGTGAAAGCGAGCCTTAATAGGGCGTTTAGT1105080.12675738833393627No Hit
TCGTTGAAGTGTGATGGGGAGTGAACGGTTCGCCT1103970.12663006660062226No Hit
TATCCCATGTAGACCACATGGTTGAT1101450.12634101185472013No Hit
ATCGCATGAGAAAAGATTGAAAGGACCGT1097250.12585925394488323No Hit
TAGTGGCGAGCGAACACGGAACAGGCCAAACCG1071730.122932001121303No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT1069450.12267047539882014No Hit
ATGCTCGTGAGGGAAACAGCCCAGATCGTC1060240.12161404912510643No Hit
AAGTGTGTAAGGATGTGGAACTGCACAGAC1059910.12157619671790494No Hit
TATTCGTTGAAAAGACTTTGGATGACTTGTGGCT1007890.11560928089178253No Hit
TCTGGTGGTTATAGCATAGAGGTCACACCTGTT1000120.11471802875858432No Hit
AAATAGTGAGAAGATAGCAAGCTGCCAGT998820.11456891321506336No Hit
ATAGAGGGTGATACCCCCGTATACGAAATGCAAT976830.1120465664442746No Hit
TGTAATGATCCCTTCGCTGTCTCGGCTGC967210.11094311142221967No Hit
AAATAGTGAGAAGATAGCAAGCTGCCAGTT965600.11075843755678219No Hit
ATGTACACGGAGTCGAGCTCAACCCGC965320.11072632036279308No Hit
TACACGTGGTCAAGGAGAAAATCCTAAGGC962500.11040285433761689No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT956430.10970659945363835No Hit
AACTGCCTGTACCTAGAACGAACACACGT956050.10966301183322454No Hit
AAAAGCTATAGAGATATAGTGGAGGTTAAC952580.1092649880362879No Hit
AAGGAGAAAATCCTAAGGCAAGCGAGATAACTGT946440.10856070385381207No Hit
AGCTAAGGTCCCTAAGTGTAAACTAAGTGTGT941240.10796424167972833No Hit
AGTGAACCAGTACCGTGAGGGAAAGGTGAAAAGC914980.1049521077006054No Hit
AGATCGTCAGCTAAGGTCCCTAAGTGTAAACT912820.10470434648983215No Hit
ATCTCAGCGCCGCAGCTAACGCATTAAGT903060.10358483287078266No Hit
TAGACGGAAAGACCCCGTGGAGCTTTACT900660.10330954263659015No Hit
CGGTGGTTCAAGTCCACTCAGGCCTACCA898700.10308472227866627No Hit
TAGAGTTACAAAGTTATTGTATAGTAGAAGCT890390.10213152984277474No Hit
ACCCCAGTGGCGAACGGGTGAGTAACACGT889200.10199503176832098No Hit
AATAGTGAGAAGATAGCAAGCTGCCAGT886210.1016520660182228No Hit
TAAACTCAAAGGAATTGACGGGGACCCGC880000.10093975253724972No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)