FastQCFastQC Report
Sat 30 Sept 2023
SRR9047191_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9047191_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61172558
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length25-35
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGATCCCATGTAGACCACATGGTTGAT5722430.9354570394129995No Hit
ATTGCACTCCGGATGTGCTGACCCCTGCG3008030.4917286604231917No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2717380.44421552553025495No Hit
AACTGCCTGTACCTAGAACGAACACACGTGGTC2701760.44166209299274356No Hit
ATTGCACTCCGGATGTGCTGACCCCTGCGA2653180.4337206235514951No Hit
AAAAGATTAAGCCATGCATGTCTAAGTACGCA2254830.36860155496521824No Hit
TTTGTATAGTAGAAGCTATTGGGAAGTAGCGGCAT2086590.3410990267891037No Hit
ATATGACTCCACGCTTCCAAGAAAAGCTT1737230.28398845116138516No Hit
AGCTAGGATGTTGGCTTAGAAGCAGCCATC1674220.2736880808548173No Hit
TTGTATAGTAGAAGCTATTGGGAAGTAGCGGCAT1631050.2666309948980718No Hit
AAGACGAGGCCGACAGGCGTAGTCGATGGACAAC1606180.2625654464212532No Hit
TAGTCCGCCGAGGGCGCACCACCGGCCCGTCTCG1571340.2568700821698514No Hit
TGCGCCCGATCTCGTCTGATCTCGGAAGCTAAGC1554630.25413846515949196No Hit
TAGTCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1533120.2506221825806271No Hit
ATCGCATGATGAGTAATAGAAAGGAGCTT1513150.2473576468716577No Hit
TATGCTCGTGAGGGAAACAGCCCAGATCGTC1478520.2416966117388781No Hit
ACCCCGAGAGGGGAGTGAAAGAGATCCTGAAACC1439890.23538168863234393No Hit
TAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCT1404000.22951467878783166No Hit
AAGACGAGGCCGACAGGCGTAGTCGATGGAC1369850.22393211021190254No Hit
ATGTACACGGAGTCGACCCAACGCGA1288970.2107104953825864No Hit
AAGGTTTCCTGGGCAAGGTTCGTCCACCCAGGGTT1236890.20219687396430278No Hit
TAAACTCAAAGGAATTGACGGGGACCCGCAC1233150.20158548870884227No Hit
AACACGAAGAACCTTACCAGGGCTTGACATCC1231190.2012650836017026No Hit
CGTTGAAGTGTGATGGGGAGTGAACGGTTCGCCT1189110.19438618211780517No Hit
AAAAGATTAAGCCATGCATGTCTAAGTACG1188970.19436329603872377No Hit
AGTTGGTCCGAGTGTTGTGGGTTATTGTTA1145570.1872686115234874No Hit
AAAACTCAAAGGAATTGACGGGGACCCGCAC1091480.17842641139839208No Hit
TTTGTATAGTAGAAGCTATTGGGAAGTAGCGGC1075760.17585663166153684No Hit
TGTATAGTAGAAGCTATTGGGAAGTAGCGGCAT1051290.17185647198209367No Hit
AGAGGGTGATACCCCCGTATACGAAATGCAAT1044200.1706974555486138No Hit
AGGGGAGCGTTCCAAGGGTGATGAAGTC1016740.16620851460878913No Hit
TGATGAAGAACGCAGCTAGCTGCGAGAATT1011490.16535028664323634No Hit
AGTCAGGACCTAAGACGAGGCCGACAGGCGT997720.16309927729358645No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT982670.16063902379233513No Hit
TAAAATGAGAGTTTGATCCTGGCTCAGGATAAAC969850.15854331283645193No Hit
GTTTCCTGGGCAAGGTTCGTCCACCCAGGGTT948770.1550973232147657No Hit
AAAAGATTAAGCCATGCATGTCTAAGTACGCACGG910420.14882817226639436No Hit
TTGTATAGTAGAAGCTATTGGGAAGTAGCGGC904030.14778358622832152No Hit
AGAATTAAACTCCGAATGCCATAACTTGTGCAT899310.14701199841929122No Hit
AGGAAATGCCTCTATATTGACGGTACCTTACC895270.14635157156579914No Hit
ACGTGGTCAAGGAGAAAATCCTAAGGC894420.14621262037137633No Hit
AAATAGCGAGAAGATAGCAAGCTGCCAGTT828470.1354316424040989No Hit
AGTGGCGAGCGAACACGGAACAGGCCAAACCG823290.13458485747808682No Hit
CGGTGGTTCAAGTCCACTCAGGCCTACCA809580.13234365644804325No Hit
TGGTTCACTATGAGATGGGGATGCGGCGT805210.13162928383671646No Hit
TGGTTCACTATGAGATGGGGATGCGGCGTATT798620.1305520033999559No Hit
ACAAGTGGTGGAGCATGTGGTTTAATTCGA781510.127754997592221No Hit
AAGGACTGGTGGAGCGCTTGGAAGTGATT777650.1271239956975479No Hit
ATAGAGGGTGATACCCCCGTATACGAAATGCAAT772930.1263524078885176No Hit
AGTACCGGTGAAGATGCCGGTTACCCGCAACT760770.12436458844830389No Hit
TAGAGTTACAAAGTTATTGTATAGTAGAAGCT757390.12381205311048135No Hit
TAGTGGCGAGCGAACACGGAACAGGCCAAACCG756000.12358482703960165No Hit
AAGGAGAAAATCCTAAGGCAAGCGAGATAACTGT755630.12352434240202935No Hit
AGCTAAGGTCCCTAAGTGTAAACTAAGTGTGT755590.1235178035222918No Hit
TAAAGATTAAGCCATGCATGTCTAAGTACGCA733720.11994267102578904No Hit
AAATAGTGAGAAGATAGCAAGCTGCCAGTT731060.11950783552324229No Hit
TGCCCGATCTCGTCTGATCTCGGAAGCTAAGC729170.1191988734556433No Hit
TCGTTGAAGTGTGATGGGGAGTGAACGGTTCGCCT721430.11793360022642832No Hit
AAATAGCGAGAAGATAGCAAGCTGCCAGT721060.11787311558885605No Hit
AGGATGTTGGCTTAGAAGCAGCCATCATTT718200.11740558568762156No Hit
AGATCGTCAGCTAAGGTCCCTAAGTGTAAACT716060.1170557556216629No Hit
AGTGAACCAGTACCGTGAGGGAAAGGTGAAAAGC707680.11568586031664721No Hit
TTAAGATCCCATGTAGACCACATGGTTGAT702680.11486850034945408No Hit
ATGTGAATTGTTGTGGAGGTAGAGCACTGAATCTA697490.1140200807035076No Hit
AAATAGTGAGAAGATAGCAAGCTGCCAGT696580.11387132118947847No Hit
AAAAGATTAAGCCATGCATGTCTAAGTACGC688850.11260768268019788No Hit
TTAACTGCCTGTACCTAGAACGAACACACGTGGTC688560.11256027580210066No Hit
ATGTACACGGAGTCGAGCTCAACCCGCAACGCGA687420.11237391772958064No Hit
AAGTGGTGGAGCATGTGGTTTAATTCGA683400.11171676031595736No Hit
TTCCCGGGGCTACGCCTGTCTGAGCGTCGCT673160.11004280710314583No Hit
TACACGTGGTCAAGGAGAAAATCCTAAGGC668310.10924996793496848No Hit
TCGGGTCTTCCCGGAGTCGGGTTGCTTGGGAATGC667090.10905053210297337No Hit
ATGTGAATTGTTGTGGAGGTAGAGCACTGAATCT661370.10811547230050443No Hit
TAAACTCAAAGGAATTGACGGGGACCCGC657520.1074861051257657No Hit
TTGTCGATGAAGAACGCAGCTAGCTGCGAGAATT656100.10725397489508286No Hit
TCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTC648850.10606880294265282No Hit
AACTAGACGGAAAGACCCCGTGGAGCTTTACT648310.10598052806619597No Hit
AGCTATGTCGCGGTGAATACGTTCTCGGGTCTTG642570.10504219882385825No Hit
TCTGGTGGTTATAGCATAGAGGTCACACCTGTT637480.10421012637725563No Hit
AGCTAACGCATTAAGTACTCCGCCTGAGTAG637280.10417743197856791No Hit
AGTAGGTGAGGTAATGGCTCACCTAGGCGATGAT624710.10212258902104437No Hit
TATTCGTTGAAAAGACTTTGGATGACTTGTGGCT616450.10077231035524133No Hit
AACTGCCTGTACCTAGAACGAACACACGT614820.10050585100593636No Hit
TCGGCGACGACCCATTCGAACGTCTGCCCTATC614180.10040122893013564No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)