FastQCFastQC Report
Sat 30 Sept 2023
SRR9047192_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9047192_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73089739
Total Bases2.2 Gbp
Sequences flagged as poor quality0
Sequence length25-35
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGATCCCATGTAGACCACATGGTTGAT9145871.2513206539155928No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT9068201.240693991259156No Hit
ATGTACACGGAGTCGACCCAACGCGA8368541.1449678319414986No Hit
AAAAGATTAAGCCATGCATGTCTAAGTACGCA3263370.44648811784647363No Hit
AACTGCCTGTACCTAGAACGAACACACGTGGTC2710320.3708208617354619No Hit
ACGTGGTCAAGGAGAAAATCCTAAGGC2526120.3456189657483932No Hit
TTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2101500.28752325959188335No Hit
ACAAGTGGTGGAGCATGTGGTTTAATTCGA1972400.2698600415032266No Hit
TTTGTATAGTAGAAGCTATTGGGAAGTAGCGGCAT1962410.26849322857754354No Hit
CCCCGGGGCTACGCCTGTCTGAGCGTCGCT1940630.2655133301269553No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT1870810.2559606896393487No Hit
AAAAGATTAAGCCATGCATGTCTAAGTACG1823420.24947687937427165No Hit
AGTACCGTGAGGGAAAGGTGAAAAGC1821320.2491895613418458No Hit
AGCTAGGATGTTGGCTTAGAAGCAGCCATC1794820.24556388140885274No Hit
AAGTGGTGGAGCATGTGGTTTAATTCGA1773660.24266881018688546No Hit
ATTGCACTCCGGATGTGCTGACCCCTGCG1761690.24103109740205805No Hit
AGTTGGTCCGAGTGTTGTGGGTTATTGTTA1698430.23237598372050555No Hit
AAAAGATTAAGCCATGCATGTCTAAGTACGCACGG1597510.2185682999907826No Hit
TTAAGATCCCATGTAGACCACATGGTTGAT1555230.21278363027127517No Hit
TATGCTCGTGAGGGAAACAGCCCAGATCGTC1479860.20247164926940017No Hit
TTGTATAGTAGAAGCTATTGGGAAGTAGCGGCAT1474190.20169589058185036No Hit
ATGTACACGGAGTCGAGCTCAACCCGC1449980.19838352412231217No Hit
TGTATAGTAGAAGCTATTGGGAAGTAGCGGCAT1411050.19305719507357932No Hit
TGATGAAGAACGCAGCTAGCTGCGAGAATT1408380.19269189071806644No Hit
CCCCCAGTGGCGAACGGGTGAGTAACACGT1374450.18804965222272854No Hit
AAGACGAGGCCGACAGGCGTAGTCGATGGAC1365910.18688122555753003No Hit
ATCGCATGATGAGTAATAGAAAGGAGCTT1321920.18086259686876158No Hit
CGTTGAAGTGTGATGGGGAGTGAACGGTTCGCCT1304850.17852711171947133No Hit
TGCGCCCGATCTCGTCTGATCTCGGAAGCTAAGC1284080.17568539956066884No Hit
ATGTACACGGAGTCGAGCTCAACCCGCAACGCGA1276080.17459085467523697No Hit
TAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCT1240280.16969276631292937No Hit
AGGGGAGCGTTCCAAGGGTGATGAAGTC1195690.1635920467577535No Hit
AGCTATGTCGCGGTGAATACGTTCTCGGGTCTTG1187810.1625139200456031No Hit
AACACGAAGAACCTTACCAGGGCTTGACATCC1187270.16244003826583647No Hit
TCGACTCTTAGCGGTGGATCACTCGGCTC1177310.1610773298834738No Hit
CGGTGGTTCAAGTCCACTCAGGCCTACCA1161960.1589771718845514No Hit
ATTGCACTCCGGATGTGCTGACCCCTGCGA1152090.15762677713214984No Hit
ACGTATCTAACCTACCTCATAGCGGGGG1147350.15697825928753145No Hit
AGGAGCGGTAGTTCAGTCGGTTAGA1095760.1499198129576027No Hit
TCGGGTCTTCCCGGAGTCGGGTTGCTTGGGAATGC1069320.1463023421112504No Hit
TAAACTCAAAGGAATTGACGGGGACCCGCAC1059020.14489311557125686No Hit
AAGACGAGGCCGACAGGCGTAGTCGATGGACAAC1043150.14272181215478139No Hit
TTTGTATAGTAGAAGCTATTGGGAAGTAGCGGC1041500.14249606227216108No Hit
AAGTCGCAAGACGATGTATAGGGGGTGACACC1030480.14098832669247868No Hit
AGTGGCGAGCGAACACGGAACAGGCCAAACCG1027550.14058744962818925No Hit
AAAACTCAAAGGAATTGACGGGGACCCGCAC1019230.1394491229473401No Hit
ATATGACTCCACGCTTCCAAGAAAAGCTT988910.13530079783155335No Hit
TGTAATGATCCCTTCGCTGTCTCGGCTGC988590.13525701603613607No Hit
ATGTGAATTGTTGTGGAGGTAGAGCACTGAATCT950420.13003466875151928No Hit
AAAACTCAAAGGAATTGACGGGGACCCGC947170.12959000989181257No Hit
TAAACTCAAAGGAATTGACGGGGACCCGC926420.12675103409522367No Hit
TGTACAGTGAAACTGCGAATGGCTCATTAAATC917460.12552514382354No Hit
TAAAATGAGAGTTTGATCCTGGCTCAGGATAAAC913470.12497923956193085No Hit
ATGTGAATTGTTGTGGAGGTAGAGCACTGAATCTA890360.12181737302413954No Hit
AACTGCCTGTACCTAGAACGAACACACGT877270.12002642395535165No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCGC854840.11695759373282207No Hit
TACACGTGGTCAAGGAGAAAATCCTAAGGC843980.1154717490508483No Hit
AAGACCACTTGGTAAGCCTAAATACTACC842790.11530893549914031No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGG839880.11491079479706445No Hit
AAAAGATTAAGCCATGCATGTCTAAGTACGC831200.1137232135963709No Hit
GCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT830330.11360418184008017No Hit
AAGGTTTCCTGGGCAAGGTTCGTCCACCCAGGGTT830290.11359870911565302No Hit
TAGAGTTACAAAGTTATTGTATAGTAGAAGCT817530.1118529100233892No Hit
TTGTATAGTAGAAGCTATTGGGAAGTAGCGGC814450.11143151024249791No Hit
AAATAGTGAGAAGATAGCAAGCTGCCAGT811160.11098137865836408No Hit
TCGGCGACGACCCATTCGAACGTCTGCCCTATC810030.11082677419329683No Hit
TAGTCCGCCGAGGGCGCACCACCGGCCCGTCTCGC804200.11002912460803835No Hit
AGTACCGGTGAAGATGCCGGTTACCCGCAACT791950.1083531027522208No Hit
AAGGACTGGTGGAGCGCTTGGAAGTGATT786630.10762523040340861No Hit
TGCCCGATCTCGTCTGATCTCGGAAGCTAAGC783040.10713405338607107No Hit
AACACGTATCTAACCTACCTCATAGCGGGGG778540.10651837188801563No Hit
TGGTTCACTATGAGATGGGGATGCGGCGT777330.10635282197409407No Hit
AGTCAGGACCTAAGACGAGGCCGACAGGCGT771980.1056208450819615No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT760870.104100795872318No Hit
TAAAGATTAAGCCATGCATGTCTAAGTACGCA755960.10342901894888419No Hit
AGAATTAAACTCCGAATGCCATAACTTGTGC740000.10124540190244762No Hit
TGGTTCACTATGAGATGGGGATGCGGCGTATT735410.1006174067744311No Hit
ATGAGTAACGTTTGGAAGTGAGAATCTTCC734570.10050247956146074No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)