FastQCFastQC Report
Sat 30 Sept 2023
SRR9047193_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9047193_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13723729
Total Bases426.8 Mbp
Sequences flagged as poor quality0
Sequence length25-35
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGATCCCATGTAGACCACATGGTTGAT974440.7100402521792728No Hit
TAGTCCGCCGAGGGCGCACCACCGGCCCGTCTCG784720.5717979420899377No Hit
ATTGCACTCCGGATGTGCTGACCCCTGCGA776450.5657718831375933No Hit
ACCCCGAGAGGGGAGTGAAAGAGATCCTGAAACC670310.4884313877081077No Hit
TAGTCCGCCGAGGGCGCACCACCGGCCCGTCTCGC624420.4549929541744813No Hit
AAGGTTTCCTGGGCAAGGTTCGTCCACCCAGGGTT596810.4348745155197979No Hit
TGCGCCCGATCTCGTCTGATCTCGGAAGCTAAGC557320.4060995375236571No Hit
ATTGCACTCCGGATGTGCTGACCCCTGCG554840.4042924485028814No Hit
AAGACGAGGCCGACAGGCGTAGTCGATGGACAAC542670.3954245963323817No Hit
TAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCT534710.38962442350763415No Hit
AAAAGATTAAGCCATGCATGTCTAAGTACGCA456700.3327812724952526No Hit
CGTTGAAGTGTGATGGGGAGTGAACGGTTCGCCT433900.3161677121429605No Hit
ACGTGGTCAAGGAGAAAATCCTAAGGC427760.3116937094866854No Hit
AGCTAGGATGTTGGCTTAGAAGCAGCCATC418990.30530331807047484No Hit
TTGTATAGTAGAAGCTATTGGGAAGTAGCGGCAT404230.29454822373714895No Hit
TGATGAAGAACGCAGCTAGCTGCGAGAATT399610.2911817917710267No Hit
TATGCTCGTGAGGGAAACAGCCCAGATCGTC387390.28227750635414034No Hit
AAGACGAGGCCGACAGGCGTAGTCGATGGAC385570.2809513361856679No Hit
AGGGGAGCGTTCCAAGGGTGATGAAGTC362610.2642211894449388No Hit
TGCCCGATCTCGTCTGATCTCGGAAGCTAAGC359370.26186031507908675No Hit
TTTGTATAGTAGAAGCTATTGGGAAGTAGCGGCAT333790.24322106622769948No Hit
AGTCAGGACCTAAGACGAGGCCGACAGGCGT325970.23752290649283445No Hit
ACCCCAGTGGCGAACGGGTGAGTAACACGT319940.23312905697860983No Hit
TAAACTCAAAGGAATTGACGGGGACCCGCAC314190.22893923364415023No Hit
ATATGACTCCACGCTTCCAAGAAAAGCTT304620.22196591028575394No Hit
AGGAAATGCCTCTATATTGACGGTACCTTACC303850.22140483829140023No Hit
AGTAGGTGAGGTAATGGCTCACCTAGGCGATGAT293900.2141546222604658No Hit
TCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTC293540.21389230288648226No Hit
TAAAATGAGAGTTTGATCCTGGCTCAGGATAAAC283430.20652550046711066No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT280980.204740271394167No Hit
AAAACTCAAAGGAATTGACGGGGACCCGCAC271270.19766493494588824No Hit
AACTGCCTGTACCTAGAACGAACACACGTGGTC269500.1963751980238024No Hit
AAGGACTGGTGGAGCGCTTGGAAGTGATT257700.18777695187656357No Hit
AGAGGGTGATACCCCCGTATACGAAATGCAAT256560.186946273858949No Hit
TATTCGTTGAAAAGACTTTGGATGACTTGTGGCT253640.18481857226997123No Hit
TGCCGGCCGAGGTGGGATCCCGAGGCCTCTCC252160.18374014817692771No Hit
TCGGGTCTTCCCGGAGTCGGGTTGCTTGGGAATGC242330.17657737193732112No Hit
AGTTGGTCCGAGTGTTGTGGGTTATTGTTA239690.17465369652810836No Hit
AACACGAAGAACCTTACCAGGGCTTGACATCC237730.17322551326975344No Hit
AACTAGACGGAAAGACCCCGTGGAGCTTTACT233120.16986636795290844No Hit
AAGGAGAAAATCCTAAGGCAAGCGAGATAACTGT231950.16901382998746187No Hit
AGTACCGGTGAAGATGCCGGTTACCCGCAACT231750.16886809700191543No Hit
TTGTATAGTAGAAGCTATTGGGAAGTAGCGGC229380.16714116112319036No Hit
AGTGAACCAGTACCGTGAGGGAAAGGTGAAAAGC228710.16665295562160984No Hit
AGTACCGTGAGGGAAAGGTGAAAAGC224640.16368728936574017No Hit
TGTCGATGAAGAACGCAGCTAGCTGCGAGAATT222310.16198950008412435No Hit
TCGTTGAAGTGTGATGGGGAGTGAACGGTTCGCCT218580.1592715799036836No Hit
AAATGCCGTGTGAGTGATGACGGCCTTTGGGTTGT217570.1585356283266742No Hit
TTGTCGATGAAGAACGCAGCTAGCTGCGAGAATT214060.1559780144303345No Hit
ATGAGTAACGTTTGGAAGTGAGAATCTTCC210310.15324552095133911No Hit
TGGTTCACTATGAGATGGGGATGCGGCGT208880.15220353010468218No Hit
TTGGCGCTGCGGGATGAACCGAACGCCGGGTT207680.15132913219140365No Hit
TAGTGAAAGCGAGCCTTAATAGGGCGTTTAGT207670.15132184554212635No Hit
ATCGCATGAGAAAAGATTGAAAGGACCGT194300.14157959545834808No Hit
ATAGAGGTCACACCTGTTACCATACCGAACAC191580.13959762685491678No Hit
TGGTTCACTATGAGATGGGGATGCGGCGTATT189920.13838804307488148No Hit
TTTGTATAGTAGAAGCTATTGGGAAGTAGCGGC189290.13792898417041025No Hit
AGCTAAGGTCCCTAAGTGTAAACTAAGTGTGT188050.13702543966002242No Hit
ATGTAGACCACATGGTTGATAGGATGGATGTGT187340.13650808756133262No Hit
ATGTGAATTGTTGTGGAGGTAGAGCACTGAATCTA183120.13343312156630316No Hit
TCGACCGGCGACCGGCCGCCGCCGGGCGCATTTCC182830.13322180873726086No Hit
ACGTAGCCGAACTGAGAGGTTGATCGGCCAC180220.13131999327588004No Hit
CCCCCAGTGGCGAACGGGTGAGTAACACGT179200.1305767550495933No Hit
TAAAGATTAAGCCATGCATGTCTAAGTACGCA178560.13011040949584476No Hit
AGAATTAAACTCCGAATGCCATAACTTGTGCAT177150.12908299194774248No Hit
ATAGAGGGTGATACCCCCGTATACGAAATGCAAT176700.12875509273026303No Hit
AAAAGATTAAGCCATGCATGTCTAAGTACG174110.12686785056743688No Hit
TCGGCGACGACCCATTCGAACGTCTGCCCTATC174000.12678769742538637No Hit
AGGATGTTGGCTTAGAAGCAGCCATCATTT172680.12582585972077998No Hit
AGATCGTCAGCTAAGGTCCCTAAGTGTAAACT171810.12519192123365303No Hit
TACTCGGCTCGTGCGTCGATGAAGAACGCAGCT171650.1250753348452159No Hit
TGTACAGTGAAACTGCGAATGGCTCATTAAATC171600.1250389015988293No Hit
AAAAGATTAAGCCATGCATGTCTAAGTACGCACGG171270.12479844217267769No Hit
TAAACTCAAAGGAATTGACGGGGACCCGC168660.1228966267112969No Hit
TAGGGTCGGGCCTGGTTAGTACTTGGATGGGAGAC165900.1208855115107563No Hit
TAGTCAGGACCTAAGACGAGGCCGACAGGCGT164530.11988724055976331No Hit
TAGAGTTACAAAGTTATTGTATAGTAGAAGCT160160.11670297482557401No Hit
TACACGTGGTCAAGGAGAAAATCCTAAGGC159440.1161783360776069No Hit
ATGCTCGTGAGGGAAACAGCCCAGATCGTC159340.11610546958483367No Hit
AAAACTCAAAGGAATTGACGGGGACCCGC158180.11526021826866445No Hit
TAGTGAAAGCGAGCCTTAATAGGGCGTTT156350.1139267614509147No Hit
ATGTACACGGAGTCGACCCAACGCGA156140.11377374181609096No Hit
AGGGGAGCGTTCCAAGGGTGATGAAGTCAGACCGT155870.11357700228560327No Hit
TAGACGGAAAGACCCCGTGGAGCTTTACT154970.11292120385064439No Hit
AGCTATGTCGCGGTGAATACGTTCTCGGGTCTTG154280.11241842505050922No Hit
ACCCCAGTGGCGAACGGGTGAGTAACACGTATCT153870.11211967243013907No Hit
TAGACCACATGGTTGATAGGATGGATGTGT153670.11197393944459265No Hit
ATGTGAATTGTTGTGGAGGTAGAGCACTGAATCT153230.11165332687639053No Hit
TACCCCGAGAGGGGAGTGAAAGAGATCCTGAAACC153160.11160232033144926No Hit
AAATAGCGAGAAGATAGCAAGCTGCCAGTT152890.1114055808009616No Hit
AAGTGTGTAAGGATGTGGAACTGCACAGACAGCT150950.10999197084116132No Hit
ATGGGTGATAAGGTCCATGCTCGTGAGGGAAAC150820.10989724440055613No Hit
ACGTGAAATTTTGTCGGAATCTGCCAAGACC150720.10982437790778295No Hit
ACGAAACCGGGTGATCTAGCCATGAGC148890.1084909210900332No Hit
AAATACTACCATTTTACCGATAGTGAACC147260.10730319725782986No Hit
AAATAGTGAGAAGATAGCAAGCTGCCAGTT147050.1071501776230061No Hit
AAGACCACTTGGTAAGCCTAAATACTACC145720.1061810532691224No Hit
ATTATCGCATGAGAAAAGATTGAAAGGACCGT145360.10591873389513885No Hit
AGGTGAGGTAATGGCTCACCTAGGCGATGATACGT144900.10558354802838207No Hit
ACAGAAGTTAAGCTCTATTACGGTGAAAAT143540.10459256372666642No Hit
AGGATAAACGCTGGCGGCATGCCTAATAC140140.10211510297237726No Hit
AGTGGCGAGCGAACACGGAACAGGCCAAACCG138360.1008180794010141No Hit
AAAAGCTATAGAGATATAGTGGAGGTTAAC137830.10043188698931609No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)