FastQCFastQC Report
Sat 30 Sept 2023
SRR9047194_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9047194_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71898368
Total Bases2.2 Gbp
Sequences flagged as poor quality0
Sequence length25-35
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGATCCCATGTAGACCACATGGTTGAT4293790.5972027070211108No Hit
TGCGCCCGATCTCGTCTGATCTCGGAAGCTAAGC3889030.5409065752368677No Hit
TAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCT3465740.4820331944113113No Hit
ACCCCGAGAGGGGAGTGAAAGAGATCCTGAAACC2893090.4023860458140023No Hit
AAGGTTTCCTGGGCAAGGTTCGTCCACCCAGGGTT2387160.3320186627880065No Hit
AACTGCCTGTACCTAGAACGAACACACGTGGTC2254240.31353145595738696No Hit
ATTGCACTCCGGATGTGCTGACCCCTGCG2168150.3015576097638266No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2140570.29772163952316694No Hit
TGCCCGATCTCGTCTGATCTCGGAAGCTAAGC2077530.28895370754451616No Hit
TGATGAAGAACGCAGCTAGCTGCGAGAATT1963890.2731480636667581No Hit
AAGACGAGGCCGACAGGCGTAGTCGATGGACAAC1789960.248956972152692No Hit
AAAAGATTAAGCCATGCATGTCTAAGTACGCA1660980.23101776107073807No Hit
TAAACTCAAAGGAATTGACGGGGACCCGCAC1655110.23020133085635547No Hit
AGCTAGGATGTTGGCTTAGAAGCAGCCATC1538970.21404797394010389No Hit
AACACGAAGAACCTTACCAGGGCTTGACATCC1534590.2134387806966634No Hit
AAGACGAGGCCGACAGGCGTAGTCGATGGAC1506740.20956525744784638No Hit
ATGTACACGGAGTCGACCCAACGCGA1506010.2094637252406063No Hit
ATTGCACTCCGGATGTGCTGACCCCTGCGA1451650.2019030529316048No Hit
TATGCTCGTGAGGGAAACAGCCCAGATCGTC1426100.19834942567820177No Hit
TTGTATAGTAGAAGCTATTGGGAAGTAGCGGCAT1412300.19643004970571792No Hit
TAGTCCGCCGAGGGCGCACCACCGGCCCGTCTCG1409640.1960600830327609No Hit
AGGGGAGCGTTCCAAGGGTGATGAAGTC1401940.19498912687420109No Hit
TCGGGTCTTCCCGGAGTCGGGTTGCTTGGGAATGC1367670.19022267654253294No Hit
TGGTTCACTATGAGATGGGGATGCGGCGT1361440.18935617565060725No Hit
AAAACTCAAAGGAATTGACGGGGACCCGCAC1357640.1888276518320972No Hit
ATATGACTCCACGCTTCCAAGAAAAGCTT1309400.18211818104132768No Hit
AGTTGGTCCGAGTGTTGTGGGTTATTGTTA1272420.1769748097759326No Hit
TTTGTATAGTAGAAGCTATTGGGAAGTAGCGGCAT1234410.17168818073867825No Hit
TGCGCCCGATCTCGTCTGATCTCGGAAGCT1228500.17086618711567972No Hit
ACGTAGCCGAACTGAGAGGTTGATCGGCCAC1200150.16692312125916403No Hit
TTGTCGATGAAGAACGCAGCTAGCTGCGAGAATT1174240.16331942332821797No Hit
AGTCAGGACCTAAGACGAGGCCGACAGGCGT1167230.16234443596828235No Hit
TTGGCGCTGCGGGATGAACCGAACGCCGGGTT1155910.160769991329984No Hit
AGGAAATGCCTCTATATTGACGGTACCTTACC1101760.15323852691621595No Hit
TGTATAGTAGAAGCTATTGGGAAGTAGCGGCAT1092630.1519686788996379No Hit
AAGGACTGGTGGAGCGCTTGGAAGTGATT1092270.15191860822209485No Hit
CGTTGAAGTGTGATGGGGAGTGAACGGTTCGCCT1091950.15187410095316767No Hit
AACTAGACGGAAAGACCCCGTGGAGCTTTACT1071920.1490882240887582No Hit
TGTCGATGAAGAACGCAGCTAGCTGCGAGAATT1063950.14797971492204107No Hit
TTGTATAGTAGAAGCTATTGGGAAGTAGCGGC1044810.14531762389933525No Hit
TGGTTCACTATGAGATGGGGATGCGGCGTATT1033630.14376265119119255No Hit
TAAAATGAGAGTTTGATCCTGGCTCAGGATAAAC1025640.14265136032016748No Hit
TACTCGGCTCGTGCGTCGATGAAGAACGCAGCT1013160.1409155768320082No Hit
AAAAGCTATAGAGATATAGTGGAGGTTAAC999710.13904488068491347No Hit
TCGCCGCGACCGGCTCCGGGACGGCTGGG960720.13362194813656966No Hit
TAGGGTCGGGCCTGGTTAGTACTTGGATGGGAGAC956600.13304891704913246No Hit
TCAGCGGAGGAGAAGAAACTAACCAGGATTCCCTC947570.13179297755409414No Hit
TCGGCGACGACCCATTCGAACGTCTGCCCTATC938450.13052452038967002No Hit
TAGTGAAAGCGAGCCTTAATAGGGCGTTTAGT917460.12760512171847907No Hit
TAGGGTCGGGCCTGGTTAGTACTTGGATGGGA913120.12700149188365445No Hit
AGCTATGTCGCGGTGAATACGTTCTCGGGTCTTG891580.1240055963439949No Hit
ACGTGGTCAAGGAGAAAATCCTAAGGC882300.12271488554510723No Hit
TAGTCCGCCGAGGGCGCACCACCGGCCCGTCTCGC882260.12270932213649133No Hit
AGTAGGTGAGGTAATGGCTCACCTAGGCGATGAT876380.12189150106995475No Hit
AAGGAGAAAATCCTAAGGCAAGCGAGATAACTGT866430.12050760317675084No Hit
GTTTCCTGGGCAAGGTTCGTCCACCCAGGGTT852490.11856875527411137No Hit
AAAAATGAGAGTTTGATCCTGGCTCAGGATAAAC840360.11688165161134116No Hit
TGTAGCTGGTTCCCTCCGAAGTTTCCCTC838790.11666328782316729No Hit
TACCCCGAGAGGGGAGTGAAAGAGATCCTGAAACC832810.11583155823509095No Hit
TATTCGTTGAAAAGACTTTGGATGACTTGTGGCT823940.11459787237451621No Hit
AAAAGATTAAGCCATGCATGTCTAAGTACG823490.11453528402758739No Hit
TGTAATGATCCCTTCGCTGTCTCGGCTGC816870.11361453990165675No Hit
TTTGTATAGTAGAAGCTATTGGGAAGTAGCGGC806290.11214301832275247No Hit
ATGAAGCCGGAATCACTAGTAATCGCGAATC804310.11186762959626566No Hit
ACAAGTGGTGGAGCATGTGGTTTAATTCGA790170.10990096465054672No Hit
TAAACTCAAAGGAATTGACGGGGACCCGC788380.10965200211498541No Hit
AGAATTAAACTCCGAATGCCATAACTTGTGCAT773870.10763387563956946No Hit
AGTACCGGTGAAGATGCCGGTTACCCGCAACT772940.1075045263892499No Hit
AACTCCGTAACTTCGGAAGAAGGAGTGCTCA772750.1074781001983244No Hit
AACTCGACTTCATGAAGCCGGAATCACTAGT769790.10706640796074815No Hit
AGAGGGTGATACCCCCGTATACGAAATGCAAT768720.10691758678027295No Hit
AGTGAACCAGTACCGTGAGGGAAAGGTGAAAAGC768390.1068716886591918No Hit
ATAGAGGTCACACCTGTTACCATACCGAACAC756410.10520544777873123No Hit
AGCTAACGCATTAAGTACTCCGCCTGAGTAG729810.10150578104916096No Hit
AGCTAAGGTCCCTAAGTGTAAACTAAGTGTGT729650.10148352741469738No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)