FastQCFastQC Report
Fri 22 Sept 2023
SRR9113062.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9113062.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences131541396
Total Bases3.7 Gbp
Sequences flagged as poor quality0
Sequence length14-40
%GC67

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG52672914.004283944196548No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG16138781.2268974247468074No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG15569471.1836175130755036No Hit
CCCCCCGCGGGGGCGCGCCGGC11566510.8793057054069884No Hit
TCGCTTCTGGCGCCAAGCGCCCGG11320410.8605967660553031No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG10101100.7679027520735754No Hit
AGCGATGTACACTGACTG7487430.5692071262494431No Hit
AGTCACTTAGCGATGTACACTGACTGTG6873830.5225602136684029No Hit
CGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG6812470.5178955224102989No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG6075750.46188881863470566No Hit
CCCCCGCGGGGGCGCGCCGGC5755840.4375687179114322No Hit
ATGTACACGGAGTCGAGCACCCGCAACGCGACTG5516190.41935011849805814No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG5472060.4159952810596597No Hit
TCGCTTCTGGCGCCAAGCGCCCGGC4600820.3497621387566846No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGC4354090.33100530573660625No Hit
GAGGGCGCACCACCGGCCCGTCTCGC4075680.3098401053916137No Hit
CCCGCGGACGCTACGCCGCGACGAGT3989860.30331592345272057No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG3951140.3003723633889365No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG3891960.29587339942781204No Hit
TCGCTTCTGGCGCCAAGCGCCCG3784880.2877329962348887No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCC3684190.2800783716785247No Hit
CTCGCTTCTGGCGCCAAGCGCCCGG3545170.26950983551976293No Hit
CGGTCCCCCGCGAGGGGGGCCCGGGC3343150.2541519325216831No Hit
CGCTTCTGGCGCCAAGCGCCCGG3288390.24998898445626958No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC3132860.23816533009882304No Hit
GAGGGCGCACCACCGGCCCGTCTCG3075560.23380928692591949No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCT3070230.233404091286974No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC3068730.23329005874318073No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC3037320.23090221727614935No Hit
ATGCGTGCATTTATCAGA2974940.22615998388826586No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG2931900.22288801009835718No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC2902850.2206795798335605No Hit
GCTAAACCTAGCCCCAAACC2878820.21885277848199208No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC2750260.20907942926194886No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGG2591090.19697905593156392No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC2575890.19582352615445864No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG2546490.19358848829611022No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCG2499460.1900131879397114No Hit
GCGCAGCGGAAGCGTGCTGGGC2424180.18429027467520567No Hit
CGGCCGAGGTGGGATCCCG2391220.18178459957958784No Hit
CCGCGGACGCTACGCCGCGACGAGT2272980.17279579426084243No Hit
CCCCCCCGCGGGGGCGCGCCGGC2213090.1682428548956558No Hit
TGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG2205650.16767725347844112No Hit
CCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG2177310.16552279861770663No Hit
CTCGCTTCTGGCGCCAAGCGCCCG2141280.1627837369157919No Hit
CCCCGCGGGGGCGCGCCGGC2128450.16180837855788No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC2126360.161649493213528No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGA2101060.15972614430821458No Hit
TAGTCACTTAGCGATGTACACTGACTGTG2080690.15817758236350174No Hit
GGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC2037160.1548683579426206No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG1907040.1449764148770323No Hit
GCGCAGCGGAAGCGTGCTGGGCC1841620.1400030755337278No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTC1837890.13971951460816184No Hit
AGCTAGGAATAATGGAAT1793290.13632894697270811No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGC1686420.1282045083359158No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC1682500.127906503288136No Hit
ACCTGCGGAAGGATCATTA1674100.1272679210428936No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1654190.12575432907827738No Hit
ACCATGATCACGAAGGTGGT1621310.12325473571832854No Hit
CGCGGGCCGGTCCCCCCCGCCGGGTCCGCCCCCGGGGC1604570.12198213252959547No Hit
TCCCCGCGGGGGCGCGCCGGC1597750.12146366456381533No Hit
AAATGGATTTTTGGAGCAGGGA1594650.12122799730664253No Hit
CGTGGGGGGGCCGGGCCACCCCTCCCACGGCG1516490.11528614155805371No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC1504330.11436171773636947No Hit
ACGGTCCCCCGCGAGGGGGGCCCGGGC1480410.11254327877134587No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1476690.11226047806273852No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG1473760.11203773449386228No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG1466760.11150558262282696No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGC1464730.11135125858022672No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCC1462950.11121593996159201No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC1395420.10608219484001828No Hit
TCCCCCGCGGGGGCGCGCCGGC1354370.10296150422487534No Hit
GCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG1354080.1029394579330753No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGC1347040.10240426519420548No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCG1327970.10095453145411351No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)