FastQCFastQC Report
Fri 1 Sept 2023
SRR9113063.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9113063.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105449435
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length14-40
%GC64

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG25709022.4380424608249442No Hit
AGTCACTTAGCGATGTACACTGACTGTG18206351.7265478947326747No Hit
TCGCTTCTGGCGCCAAGCGCCCGG14211041.3476639301101994No Hit
CGCTTCTGGCGCCAAGCGCCCGG13007881.2335656421487702No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG12543361.189514197017746No Hit
ATGTACACGGAGTCGAGCACCCGCAACGCGACTG12313871.1677511595960661No Hit
CCCGCGGACGCTACGCCGCGACGAGT11689021.1084952707427973No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG10513800.9970465939433435No Hit
CCGCGGACGCTACGCCGCGACGAGT10115450.9592701942879068No Hit
CTCGCTTCTGGCGCCAAGCGCCCGG9968040.9452909823556664No Hit
GAGGGCGCACCACCGGCCCGTCTCGC8495580.8056543878115611No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG8177040.7754465445926761No Hit
CGGCCGAGGTGGGATCCCG7081850.6715872873097897No Hit
TTAGCAGTAAACTGAGAG6699220.6353016495536463No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG6570430.623088212848177No Hit
TAGTCACTTAGCGATGTACACTGACTGTG6340460.6012796559791904No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT5277280.5004559768385672No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC4983980.4726416978905577No Hit
CGCTATTAAAGGTTCGTTTGT4838860.4588796516548429No Hit
TCAACTTCTTAGAGGGAC4234310.40154885609391844No Hit
AGCGATGTACACTGACTG4178960.3962998948263687No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCG4127990.3914662985154923No Hit
TTAGCAGTAAACTGAGAGT3800800.36043815692326847No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGC3723960.3531512520669267No Hit
TCGCTTCTGGCGCCAAGCGCCCGGC3627550.3440084814110194No Hit
CGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG3620840.343372157470545No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGC3587790.34023795385911737No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGC3512990.33314450665382894No Hit
TCGACTGCATAATTTGTGGTAGTGGGG3413090.32367077168312947No Hit
GAGGGCGCACCACCGGCCCGTCTCG3199700.3034345323898606No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC3187890.30231456432175285No Hit
CGCTTCTGGCGCCAAGCGCCCGGC3103450.29430693488305554No Hit
ACCTCTAGCATCACCAGTATTAGAGGC3089060.29294229978567454No Hit
ACCATGATCACGAAGGTGGT3050850.2893187621157003No Hit
AGCTAGGAATAATGGAAT3036690.2879759384201537No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC3020970.2864851765208605No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC2971770.2818194331719274No Hit
TTTAGCAGTAAACTGAGAG2946100.27938509106283976No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCG2938470.2786615215150276No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2882490.27335281597288785No Hit
GCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG2873570.272506912910439No Hit
TCGCTTCTGGCGCCAAGCGCCCG2813980.2668558631916805No Hit
AGAATCCCGCCCAGGCGGAACGATAC2365070.22428474841994175No Hit
ACTGACCCGGTGAGGCGGGG2320310.22004005995859532No Hit
CCCCCGCGGGGGCGCGCCGGC2282640.2164677316668411No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG2271660.21542647430970113No Hit
AGCGATGTACACTGACTGTG2219560.2104857176332903No Hit
GTCACTTAGCGATGTACACTGACTGTG2173720.20613861041550388No Hit
ACGGAGTCGAGCACCCGCAACGCGACTG2134750.2024430002872941No Hit
CCGGCCGAGGTGGGATCCCG2100420.19918741148304875No Hit
AACCCGGCGGCGGGTCCGGCCGTG2068320.19614329844441555No Hit
TTTAGCAGTAAACTGAGAGT2003830.19002757103440146No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCT1995990.18928408672839261No Hit
CGCTTCTGGCGCCAAGCGCCCG1947890.1847226587795373No Hit
GCTTCTGGCGCCAAGCGCCCGG1938660.18384735774070293No Hit
TCGGCCGAGGTGGGATCCCG1911710.18129163043879754No Hit
ACGATGCCGACCGGCGATGCGGCGGCG1877220.17802086848544993No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG1846060.1750658976977923No Hit
CTCGCTTCTGGCGCCAAGCGCCCG1844350.17490373466676232No Hit
GCGAGCGCACGGGGTCGGCGGCGAC1841480.17463156630474125No Hit
TTTTAGCAGTAAACTGAGAGT1756200.16654427783325726No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC1754580.16639064969859724No Hit
CGGCCGAGGTGGGATCCCGAGGC1657870.15721942938812333No Hit
CCCCGCGGACGCTACGCCGCGACGAGT1621810.15379978090921018No Hit
GATGCCGACCGGCGATGCGGCGGCGTT1603320.15204633386608474No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG1586070.15041047872850147No Hit
CCAACTTCTTAGAGGGAC1580720.14990312655539595No Hit
GGCCGGGCGCGACCCGCTCCGGGGAC1562440.14816959427046716No Hit
CGGCCGGGCGCGACCCGCTCCGGGGAC1530550.14514539599003068No Hit
TTTTAGCAGTAAACTGAGAG1481360.14048060096291648No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGC1452700.1377627106299811No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC1451880.13768494824083222No Hit
ACACGGAGTCGAGCACCCGCAACGCGACTG1450230.13752847514071556No Hit
AAATGGATTTTTGGAAATAGG1440900.13664369088369224No Hit
AACACAAAGCACCCAACTTACACTTAGGAGATT1414040.13409649847815686No Hit
GCTAAACCTAGCCCCAAACC1370170.12993621065869154No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT1349220.1279494764481194No Hit
AGTGACGAAAAATAACAA1326040.1257512664719351No Hit
AGGGCGCACCACCGGCCCGTCTCGC1283610.12172753699438976No Hit
TCCCCGCGGGGGCGCGCCGGC1261470.11962795248736989No Hit
AGCGAGCGCACGGGGTCGGCGGCGAC1234340.11705515539272449No Hit
TGTACACGGAGTCGAGCACCCGCAACGCGACTG1228550.11650607705958785No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC1220730.11576448939721677No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGC1205360.11430691876158465No Hit
TGGCAATTTTTGACAGTCTCTACGGAGACTG1198510.1136573183156458No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGC1188190.1126786501985525No Hit
AGCTAGGAATAATGGAA1171960.11113952388649594No Hit
GCGAGCGCACGGGGTCGGCGGCGA1161960.11019120206760709No Hit
GATGCCGACCGGCGATGCGGCGGCGTTA1132440.10739175605824726No Hit
CGCGGACGCTACGCCGCGACGAGT1129790.10714045077624172No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC1093940.10374071705552523No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTT1068480.10132628970463425No Hit
GGCCGAGGTGGGATCCCG1068130.10129309844097314No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGC1065400.1010342065844165No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)