FastQCFastQC Report
Fri 14 Jul 2023
SRR9113064.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9113064.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52479474
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length14-40
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG8293211.5802768907325557No Hit
TCGCTTCTGGCGCCAAGCGCCCGG5697951.0857483060901107No Hit
AGCGATGTACACTGACTG5210010.9927710022398472No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG3652670.6960187901273552No Hit
CGCTTCTGGCGCCAAGCGCCCGG3271130.6233160797305247No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG2690240.5126270892120603No Hit
GAGGGCGCACCACCGGCCCGTCTCGC2559370.48768972036571867No Hit
AGTCACTTAGCGATGTACACTGACTGTG2414020.45999317752308266No Hit
CTCGCTTCTGGCGCCAAGCGCCCGG2396570.4566680679764435No Hit
ATGTACACGGAGTCGAGCACCCGCAACGCGACTG2112290.4024983177232302No Hit
TCGCTTCTGGCGCCAAGCGCCCG1909310.3638203385956193No Hit
TAGTCACTTAGCGATGTACACTGACTGTG1780880.33934791343373605No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG1769440.33716801353611126No Hit
TCGCTTCTGGCGCCAAGCGCCCGGC1749850.33343512551211923No Hit
AGCTAGGAATAATGGAAT1680540.3202280571638351No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG1359080.25897363224334147No Hit
CCCGCGGACGCTACGCCGCGACGAGT1357390.2586516015766469No Hit
TTTTGGTGACTCTAGAT1250330.23825124466758185No Hit
GAGGGCGCACCACCGGCCCGTCTCG1171730.22327396040592937No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGC1151980.2195105842714811No Hit
ACCATGATCACGAAGGTGGT1148720.21888938902093416No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC1077990.20541173869235047No Hit
CGCTTCTGGCGCCAAGCGCCCGGC1047100.19952562786738295No Hit
CCGCGGACGCTACGCCGCGACGAGT1032490.19674168228134298No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG899710.1714403616164293No Hit
CGGCCGAGGTGGGATCCCG837080.1595061718796953No Hit
CTCGCTTCTGGCGCCAAGCGCCCG790220.15057696652980934No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG784300.14944890644292663No Hit
CGCTTCTGGCGCCAAGCGCCCG730630.13922205089174483No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG716860.1365981678856004No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC697990.13300247635866166No Hit
CTGGATTGAGGCTCCAGTC694720.13237937560121124No Hit
CCCCCGCGGGGGCGCGCCGGC687560.13101503265829229No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCG686110.13073873415728213No Hit
AGAATCCCGCCCAGGCGGAACGATAC686080.13073301763657158No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG668780.12743649069348523No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC641520.12224207887449481No Hit
CTGGATTGAGGCTCCAGT636570.12129885295725336No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG620430.11822336481497508No Hit
CGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG617680.11769935041650761No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC603920.11507737291726666No Hit
CGGCCGAGGTGGGATCCCGAGGC603610.1150183022032576No Hit
CGCTTCTGGCGCCAAGCGCCCGGCC551860.10515730397755131No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG551300.1050505955909543No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC526320.100290639345966No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)