FastQCFastQC Report
Fri 14 Jul 2023
SRR9113065.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9113065.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51856183
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length14-40
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG36220216.984742783710093No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG13882512.6771175965651No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG8499851.6391198712022441No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG6894531.3295483009229585No Hit
AGCTAGGAATAATGGAAT4638010.8943986486625906No Hit
TCGCTTCTGGCGCCAAGCGCCCGG3298710.6361266505095448No Hit
AGCGATGTACACTGACTG2775660.5352611471615641No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG2513400.4846866573268611No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG2387460.4604002573810726No Hit
AGTCACTTAGCGATGTACACTGACTGTG2150020.41461208203465344No Hit
CGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG2062630.3977597039874685No Hit
TCGCTTCTGGCGCCAAGCGCCCGGC1999330.38555286647302983No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG1660170.3201489010481161No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCG1514850.29212524184435246No Hit
ATGTACACGGAGTCGAGCACCCGCAACGCGACTG1433330.27640484067251925No Hit
CGCTTCTGGCGCCAAGCGCCCGG1397230.2694432793096245No Hit
CCCCCGCGGGGGCGCGCCGGC1336710.2577725398724391No Hit
GAGGGCGCACCACCGGCCCGTCTCGC1245070.24010058742657553No Hit
TCGCTTCTGGCGCCAAGCGCCCG1215110.23432307001847782No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC1094600.21108379689264828No Hit
AGCTAGGAATAATGGAA1089400.21008102351073543No Hit
CTGGATTGAGGCTCCAGTC1082750.20879863062809695No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCT1053350.20312910419958988No Hit
TAGTCACTTAGCGATGTACACTGACTGTG1036900.19995686917411562No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC1035590.19970424741828763No Hit
CTGGATTGAGGCTCCAGT992700.1914332954278567No Hit
ACGATGCCGACCGGCGATGCGGCGGCG949330.18306977974063382No Hit
CCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG935980.18049535192360763No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTC912020.17587488072540935No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG867280.16724717282025944No Hit
ATGCGTGCATTTATCAGA782960.15098681675047312No Hit
AGCTAGGAATAATGGAATA730460.1408626624138533No Hit
ACCATGATCACGAAGGTGGT713100.13751494204654438No Hit
CTCGCTTCTGGCGCCAAGCGCCCGG682270.1315696529380113No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC677650.13067872735638872No Hit
GCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG673360.12985143931631063No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGC672790.1297415199263702No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGC653880.12609489595483725No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGC632540.12197966826829502No Hit
TTAGCAGTAAACTGAGAGT629800.12145128383244097No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCG626180.12075319928580165No Hit
AACGATGCCGACCGGCGATGCGGCGGCG617510.11908126751249701No Hit
ACCTGCGGAAGGATCATTA608160.11727820383540377No Hit
CGCTATTAAAGGTTCGTTTGT593540.1144588679039489No Hit
CCCCGCGGGGGCGCGCCGGC588990.11358144119477517No Hit
TTTTAGCAGTAAACTGAGAGT569910.10990203424729507No Hit
TTAGCAGTAAACTGAGAG559780.10794855456291488No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC554410.10691299820505493No Hit
AAATGGATTTTTGGAGCAGGG519670.10021370064973738No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)