FastQCFastQC Report
Wed 23 Aug 2023
SRR9113066.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9113066.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44471589
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length14-40
%GC61

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG24796445.575793570137554No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG9719832.185626872923295No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG5479161.2320585171804856No Hit
TCGCTTCTGGCGCCAAGCGCCCGG5301061.1920104766213773No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG4139530.9308257458486586No Hit
AGCGATGTACACTGACTG3473810.7811301727941405No Hit
CTCGCTTCTGGCGCCAAGCGCCCGG2600660.5847913372288092No Hit
TCGCTTCTGGCGCCAAGCGCCCGGC2328920.523687156759791No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG2209580.496852046370549No Hit
AGCTAGGAATAATGGAAT1719900.3867412967861346No Hit
AGTCACTTAGCGATGTACACTGACTGTG1594540.35855251315620856No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG1560990.3510083707600374No Hit
CCCCCGCGGGGGCGCGCCGGC1528530.34370932866824255No Hit
CGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG1513440.3403161510599498No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGC1393470.31333937719203153No Hit
CGCTTCTGGCGCCAAGCGCCCGG1383520.31110199367960517No Hit
TCGCTTCTGGCGCCAAGCGCCCG1361110.3060628213666932No Hit
GAGGGCGCACCACCGGCCCGTCTCGC1330730.2992314936171946No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC1276780.28710015286388796No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG1190210.2676337919924561No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCG1179860.2653064634142036No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC1095400.24631456276500485No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCT1063820.23921339981802767No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC1061860.23877266899547936No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG976870.21966159113406086No Hit
CTGGATTGAGGCTCCAGTC844280.18984705043932656No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC826630.1858782244097462No Hit
TAGTCACTTAGCGATGTACACTGACTGTG795820.17895020571448436No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTC746560.1678734708579898No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC716560.16112759092102602No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGC700800.15758375532747435No Hit
GCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG669190.15047584650056017No Hit
CCCCGCGGGGGCGCGCCGGC665600.14966858953477016No Hit
CTGGATTGAGGCTCCAGT649450.146037057502038No Hit
ATGTACACGGAGTCGAGCACCCGCAACGCGACTG620680.13956775864248971No Hit
CCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG619480.13929792344501116No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGC599080.13471072508787577No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGC598650.13461403414211262No Hit
CTCGCTTCTGGCGCCAAGCGCCCG559420.12579267181120962No Hit
ATGCGTGCATTTATCAGA550140.12370594628404216No Hit
TCCCCGCGGGGGCGCGCCGGC548630.12336640366054832No Hit
GAGGGCGCACCACCGGCCCGTCTCG527590.11863529319809103No Hit
AAATGGATTTTTGGAGCAGGG527560.11862854731815406No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG514810.11576154834494447No Hit
ACGATGCCGACCGGCGATGCGGCGGCG506610.11391767449550767No Hit
ACCATGATCACGAAGGTGGT506030.11378725415005972No Hit
GCTAAACCTAGCCCCAAACC502640.11302496971718282No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCG498860.11217498884512538No Hit
GCGCAGCGGAAGCGTGCTGGGC489840.11014672761074493No Hit
CGCTATTAAAGGTTCGTTTGT476140.10706610910619811No Hit
AGCTAGGAATAATGGAA471820.10609470239527533No Hit
TTAGCAGTAAACTGAGAG455270.10237322529671697No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)