FastQCFastQC Report
Tue 18 Jul 2023
SRR9113068.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9113068.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24288824
Total Bases668.2 Mbp
Sequences flagged as poor quality0
Sequence length14-40
%GC62

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG7918973.260334876649442No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG5902822.4302617533067883No Hit
AGCGATGTACACTGACTG4640311.9104712521281393No Hit
ACGATGCCGACCGGCGATGCGGCGGCG3705551.5256193548110852No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG3116001.2828945526551636No Hit
TCGCTTCTGGCGCCAAGCGCCCGG2035210.8379203538219882No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG2003000.8246591107086946No Hit
TTAGCAGTAAACTGAGAG1744800.7183550755689119No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC1653280.6806751944845085No Hit
CGCTATTAAAGGTTCGTTTGT1601480.6593485135385723No Hit
AACGATGCCGACCGGCGATGCGGCGGCG1586250.6530781399708772No Hit
GAGGGCGCACCACCGGCCCGTCTCGC1515540.6239659853437121No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCG1082860.44582644264703797No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG1024630.42185245362229146No Hit
CGCTTCTGGCGCCAAGCGCCCGG1008380.4151621338274756No Hit
TTAGCAGTAAACTGAGAGT1002800.41286478093793255No Hit
TCGCTTCTGGCGCCAAGCGCCCGGC892460.3674364802511641No Hit
ATGTACACGGAGTCGAGCACCCGCAACGCGACTG872040.3590293214690015No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG774810.3189985649366968No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG765450.31514494073488286No Hit
CGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG756100.3112954336529426No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGC743770.30621902484863No Hit
GAGGGCGCACCACCGGCCCGTCTCG738550.3040698882745414No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC706370.290820996520869No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG701080.28864304010766434No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT695740.286444498095091No Hit
TTTAGCAGTAAACTGAGAG664220.27346733625308495No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCT662590.2727962457136665No Hit
TCGACTGCATAATTTGTGGTAGTGGGG641700.26419558229743856No Hit
CCCCCGCGGGGGCGCGCCGGC635450.2616223823763555No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGC621540.2558954686319931No Hit
CTCGCTTCTGGCGCCAAGCGCCCGG555560.22873071170510356No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC542590.22339080722887203No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC527830.2173139382952423No Hit
TCGCTTCTGGCGCCAAGCGCCCG526440.21674165863279343No Hit
GCTAAACCTAGCCCCAAACC522780.21523479275900717No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTC519660.21395025135840254No Hit
AGCTAGGAATAATGGAAT512680.211076501686537No Hit
TTTTAGCAGTAAACTGAGAGT505560.20814511233643918No Hit
AGTCACTTAGCGATGTACACTGACTGTG503980.2074946073963894No Hit
ACCTCTAGCATCACCAGTATTAGAGGC494670.2036615687939441No Hit
ACGATGCCGACCGGCGATGCGGCGGCGTT494640.20364921743432288No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG485210.19976677339339277No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCG479350.19735414114738534No Hit
TTTAGCAGTAAACTGAGAGT467380.19242594865852705No Hit
TTTTAGCAGTAAACTGAGAG462990.19061853303395832No Hit
GCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG433000.17827129053263344No Hit
TAGTCACTTAGCGATGTACACTGACTGTG404340.16647162497451504No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT392660.16166282896199505No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGC389730.1604565128389913No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCT387750.15964132310399218No Hit
CGGCCGAGGTGGGATCCCG368180.15158411951109696No Hit
CCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG341210.14048024721163938No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG337420.13891985877949464No Hit
AAATGGATTTTTGGAAATAGG333830.13744181274482453No Hit
ACCATGATCACGAAGGTGGT333350.13724419099088536No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC330300.13598846942939682No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTT316980.13050446575758465No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC293220.12072218893759534No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGC292290.12033929678933818No Hit
CCCCGCGGGGGCGCGCCGGC291660.12007991823729301No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC290820.11973408016789944No Hit
AACACAAAGCACCCAACTTACACTTAGGAGATT289280.11910004370734457No Hit
CGCTTCTGGCGCCAAGCGCCCGGC282980.11650625818689286No Hit
ACGATGCCGACCGGCGATGCGGCGGCGT279500.11507350047083383No Hit
TAACGATGCCGACCGGCGATGCGGCGGCG275890.11358722019641626No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCG268500.11054466860972766No Hit
TGGCAATTTTTGACAGTCTCTACGGAGACTG260870.1074033061460695No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGC259480.10683102648362061No Hit
CGCTTCTGGCGCCAAGCGCCCG250960.1033232403512002No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC249090.10255333893481215No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGC247840.10203869895059556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)