FastQCFastQC Report
Mon 24 Jul 2023
SRR9113069.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9113069.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22387751
Total Bases602 Mbp
Sequences flagged as poor quality0
Sequence length14-40
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGATGTACACTGACTG5782942.5830821505920807No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG4252361.8994136570484457No Hit
AGTCACTTAGCGATGTACACTGACTGTG3486871.5574900757114907No Hit
TCGCTTCTGGCGCCAAGCGCCCGG3407101.5218589844062496No Hit
ACGATGCCGACCGGCGATGCGGCGGCG2167210.9680338145622577No Hit
TCGCTTCTGGCGCCAAGCGCCCGGC2023000.9036191263695937No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG1923790.8593047153329515No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG1866260.8336076276710421No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG1773580.7922099901861512No Hit
TAGTCACTTAGCGATGTACACTGACTGTG1507120.673189549052962No Hit
ATGTACACGGAGTCGAGCACCCGCAACGCGACTG1269760.5671672871473333No Hit
TTAGCAGTAAACTGAGAG1200000.536007390827243No Hit
GAGGGCGCACCACCGGCCCGTCTCGC1046810.4675815806598886No Hit
CGCTATTAAAGGTTCGTTTGT1026420.4584739217440823No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC982060.43865951519650187No Hit
AACGATGCCGACCGGCGATGCGGCGGCG930240.41551292936927875No Hit
CCCCCGCGGGGGCGCGCCGGC920820.4113052713512849No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCG836160.37348994992842294No Hit
CGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG703110.31406013047045234No Hit
CGCTTCTGGCGCCAAGCGCCCGG688140.30737343826988245No Hit
TTAGCAGTAAACTGAGAGT604550.2700360567705081No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGC573580.2562025993589084No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG569640.2544427084256922No Hit
GCTAAACCTAGCCCCAAACC543830.24291408279464963No Hit
TCGCTTCTGGCGCCAAGCGCCCG542280.24222173991483112No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG523950.23403422701994497No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC522410.23334635086838335No Hit
GAGGGCGCACCACCGGCCCGTCTCG514100.2296344996869047No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC508350.2270661309391908No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG495960.22153185462889954No Hit
TTTAGCAGTAAACTGAGAG461720.20623777707729551No Hit
AGCGATGTACACTGACTGTG431220.19261425589376976No Hit
TGGCAATTTTTGACAGTCTCTACGGAGACTG411020.1835914648148445No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGC404660.18075062564346012No Hit
GAGTCGAGCACCCGCAACGCGACTG395900.17683777169042125No Hit
CTCGCTTCTGGCGCCAAGCGCCCGG394610.17626156374528196No Hit
CGGCCGAGGTGGGATCCCG393610.1758148909195926No Hit
CCCCGCGGGGGCGCGCCGGC392740.17542628556124285No Hit
ACCTCTAGCATCACCAGTATTAGAGGC390960.17463120793151576No Hit
TCGACTGCATAATTTGTGGTAGTGGGG389720.17407733362766095No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCG370170.16534487988543378No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCT367590.16419246399515522No Hit
TTTTAGCAGTAAACTGAGAGT365790.16338845290891435No Hit
GTCACTTAGCGATGTACACTGACTGTG360890.16119975606303644No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG354250.15823384850045902No Hit
GCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG339470.15163202413677015No Hit
AGTCGAGCACCCGCAACGCGACTG335090.1496755971602507No Hit
TTTTAGCAGTAAACTGAGAG331560.14809884208556723No Hit
ACCATGATCACGAAGGTGGT325740.1454992062400551No Hit
ACGGAGTCGAGCACCCGCAACGCGACTG319810.14285043638371714No Hit
ACGATGCCGACCGGCGATGCGGCGGCGTT319660.14278343545986374No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGA319120.1425422321339915No Hit
AGCTAGGAATAATGGAAT317390.14176948814554888No Hit
AAATGGATTTTTGGAAATAGG305900.13663721737837803No Hit
ACTTAGCGATGTACACTGACTGTG284980.1272928218649564No Hit
TTTAGCAGTAAACTGAGAGT281220.1256133320403644No Hit
CCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG278830.12454578398696681No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGC274910.12279482651026447No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC273940.12236155386934579No Hit
AACACAAAGCACCCAACTTACACTTAGGAGATT269330.12030239214291778No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT261830.11695234595024753No Hit
TTGGCAATTTTTGACAGTCTCTACGGAGACTG251100.11215954653060059No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTC248140.11083739496656006No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGC246060.10990831548912618No Hit
CGCTTCTGGCGCCAAGCGCCCGGC243330.1086888986749942No Hit
CGGAGTCGAGCACCCGCAACGCGACTG241140.10771068518673449No Hit
TCCCCGCGGGGGCGCGCCGGC240250.10731314637187095No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC237030.10587485987315116No Hit
CCCCCGCGGGGGCGCGCCGG231720.10350302716874063No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG230410.10291788576708755No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)