FastQCFastQC Report
Mon 25 Sept 2023
SRR942868.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR942868.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54857951
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAACCTCAACTCATATGGGACTACCCCCTGAATTCTGTAGGCACCATCA20468163.7311200339947073No Hit
TTGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCA19780693.605801828070465No Hit
TGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCAC17739753.2337609547246857No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAATCTGTAGGCACCATCAA16102632.935332017778061No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAACTGTAGGCACCATCAAT14306912.607992048408808No Hit
ACGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTA12576452.2925482579544396No Hit
TTTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCAA6411331.1687148140111905No Hit
TTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCACTGTAGGCACCA5104630.9305178022416477No Hit
TGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCA4831410.8807128067907604No Hit
ACCGCTTGGGAACACCGCGTGTTGTTGGCCTCTGTAGGCACCATCAATTC4584880.8357731042488261No Hit
TTTGCCAAAGATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAAT4495960.8195639680381064No Hit
TTTTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCA3882570.7077497298431725No Hit
TTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCAAT3845450.70098316286002No Hit
TAACGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCG3609780.6580231186542129No Hit
AGGTCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAATTC3226120.588086128116597No Hit
TTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCTGTAGGCACCAT3127560.5701197261268471No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGACTGTAGGCACCATCAATT2915890.5315346174704921No Hit
AGCATTGTGATGGCCCTAGCGGGTGTTGACACAATGCTGTAGGCACCATC2691990.49072011457372877No Hit
TTTTGCCAAAGATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAA2565030.46757670551712727No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGCTGTAGGCACCATCAATTCG2470860.4504105521549648No Hit
ATGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCA2424100.44188671939278223No Hit
TTGCCAAAGATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAATT2209580.4027820871399298No Hit
AACTCCATCTAAAACTAAATATAACCATGAGACCGACTGTAGGCACCATC2195400.40019722938612856No Hit
AGGGAATACGGTTCCAATTCCGTAACCTGTTGAGCTGTAGGCACCATCAA2086480.38034231355086523No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCACTGTAGGCACC1953260.35605777547178163No Hit
AACTCCATCTAAAACTAAATATAACCATGAGACCGCTGTAGGCACCATCA1833840.334288825333633No Hit
AACTCTAAGCGGTGGATCACTCGGCTCATGGGTCGCTGTAGGCACCATCA1827030.333047437371476No Hit
TTGTGCTTTTATTAGGCTAAAACCAAGCGCTGTAGGCACCATCAATTCGT1797690.3276990786622708No Hit
TAACCAAACGTAATGTTACGGTGCCCAAATTAACAACCTGTAGGCACCAT1735080.31628596554763777No Hit
TTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACC1715680.3127495593118307No Hit
TAAGGTCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAAT1711520.3119912371499256No Hit
AACGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGT1711470.3119821227008643No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAATTTCTGTAGGCACCATC1608690.29324646121033576No Hit
CGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTAT1580140.28804211079630004No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGAGCGCTGTAGGCACCATCAAT1542810.2812372631270898No Hit
ATGGCAAATGTGAGATGCAGTGTATGGAGCGCTGTAGGCACCATCAATTC1426520.2600388775001823No Hit
TGTGCTTTTATTAGGCTAAAACCAAGCGCTGTAGGCACCATCAATTCGTA1409560.25694725637856947No Hit
ACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTCTGTAGGCACCATC1387540.2529332530119472No Hit
TGGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCA1343080.24482868490658719No Hit
AAGCATTGTGATGGCCCTAGCGGGTGTTGACACAATGCTGTAGGCACCAT1341440.24452973097737465No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGAGCGTCCTGTAGGCACCATCA1329190.24229669095734183No Hit
TGGAACGTACCTTGAGCATATATGCTGTGACCCGACTGTAGGCACCATCA1232800.22472585605685494No Hit
TAACCAAACGTAATGTTACGGTGCCCAAATTAACAACTCCTGTAGGCACC1230920.22438315277214785No Hit
TCGCAAAAGTTGACCGAACTTGATTATTTAGCTGTAGGCACCATCAATTC1192610.21739966190133497No Hit
ATGGCAAATGTGAGATGCAGTGTATGGAGCTGTAGGCACCATCAATTCGT1175990.2143700190333394No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCTGTAGGCACCA1110230.2023826956278407No Hit
AACTCTAAGCGGTGGATCACTCGGCTCATGGGCTGTAGGCACCATCAATT1048870.19119744373974157No Hit
TGGGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCAC1026310.18708500432325662No Hit
AGTTACATATAAAAGCATTATTTAATACAATGACCTGTAGGCACCATCAA992130.18085436694491194No Hit
CGCTAGTTACATATAAAAGCATTATTTAATACAATGACCTGTAGGCACCA991210.18068666108218295No Hit
ATGTGCTTTTATTAGGCTAAAACCAAGCGCTGTAGGCACCATCAATTCGT968180.17648854584452126No Hit
TACGGACCAAGGAGTCTAACATATGTGCAAGTTATTGGGCTGTAGGCACC914530.1667087420016836No Hit
TGAACCAAACGTAATGTTACGGTGCCCAAATTAACAACCTGTAGGCACCA908490.16560771655507148No Hit
ATTGAATTATTTAGTGAGGTCTCCGGACGTGACTGTAGGCACCATCAATT899990.16405826021464054No Hit
AATTAACGATTTAAGTCCTTCTTAAATGAGGCCACTGTAGGCACCATCAA883460.16104502335495544No Hit
TTTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCAC877040.15987472809547698No Hit
ATAACCTCAACTCATATGGGACTACCCCCTGAATTCTGTAGGCACCATCA868570.15833074042448286No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGAGCTGTAGGCACCATCAATTC853580.1555982285958876No Hit
TCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAATTCGTA801810.14616112803775702No Hit
AAATTAACGATTTAAGTCCTTCTTAAATGAGGCCACTGTAGGCACCATCA771200.14058126232239335No Hit
CTGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCA747410.13624460745899897No Hit
ACGCGAAGGTCGCGGGTTCGTTCCCCTCATGGGCCACCACTGTAGGCACC735550.13408266014164472No Hit
ACCAAACGTAATGTTACGGTGCCCAAATTAACAACCTGTAGGCACCATCA730970.1332477766076243No Hit
TTGGCAAATGTGAGATGCAGTGTATGGAGCGCTGTAGGCACCATCAATTC723480.1318824321382328No Hit
AAGGTCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAATT723130.1318186309948033No Hit
TGGATAACTGTGGTAATTCTAGAGCTAATACATGCACTGTAGGCACCATC719070.131078537731021No Hit
TGGAACGTACCTTGAGCATATATGCTGTGACCCGCTGTAGGCACCATCAA699720.12755124594427525No Hit
ATAACCTCAACTCATATGGGACTACCCCCTGAATCTGTAGGCACCATCAA699430.12749838213971937No Hit
ACCGCTGAACCACTTTCATGCTTGGGATTGTGAACTGCTGTAGGCACCAT684080.12470024627788232No Hit
TTGCGGTTAAAACGTTCGTAGTTGAACTTGTGCTGTAGGCACCATCAATT679980.1239528614548509No Hit
GTGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCA673180.12271329638250615No Hit
ATGGCAAATGTGAGATGCAGTGTATGGAGCGTCCTGTAGGCACCATCAAT665440.12130237966780787No Hit
TGGATAACTGTGGTAATTCTAGAGCTAATACATGCCTGTAGGCACCATCA658600.12005552303621403No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATTGGACCTGTAGGCACCATCAATT656350.11964537282845289No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGAGCGTCACTGTAGGCACCATC653570.11913860946064136No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGCACTGTAGGCACCAT640470.11675062380656542No Hit
AGGAGTCTAACATATGTGCAAGTTATTGGGCTGTAGGCACCATCAATTCG640410.1167396864676918No Hit
TCGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTA630340.1149040364267342No Hit
ATAACCTCAACTCATATGGGACTACCCCCTGAACTGTAGGCACCATCAAT619710.11296630455628939No Hit
TAAGCATTGTGATGGCCCTAGCGGGTGTTGACACAATGCTGTAGGCACCA618220.1126946939742609No Hit
ACCAAACGTAATGTTACGGTGCCCAAATTAACAACTCCTGTAGGCACCAT598670.10913094439126973No Hit
ATATAAAATAATCTTATCTGGTAAAGCGCTGTAGGCACCATCAATTCGTA596770.10878459532693813No Hit
ACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTCTGTAGGCACCATCA593380.10816663568057801No Hit
TTGGCAAATGTGAGATGCAGTGTATGGAGCTGTAGGCACCATCAATTCGT571710.10421643345738522No Hit
TAAGGGAATACGGTTCCAATTCCGTAACCTGTTGAGCTGTAGGCACCATC561850.10241906410248536No Hit
CTTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCAA553010.10080762950843715No Hit
TTCGCAAAAGTTGACCGAACTTGATTATTTAGCTGTAGGCACCATCAATT551160.10047039489316689No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)