FastQCFastQC Report
Tue 26 Sept 2023
SRR942871.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR942871.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences146555910
Total Bases8.3 Gbp
Sequences flagged as poor quality0
Sequence length57
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCAC67255174.589045231952775No Hit
TTGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCA56026423.82287005689501No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAATCTGTAGGCACCATCAA45026093.072280742550744No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAATTCTGTAGGCACCATCA41700812.845385764381662No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAACTGTAGGCACCATCAAT25430931.7352374257715024No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCACTGTAGGCACC22008791.5017333657851124No Hit
TGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACCA18346681.2518553499480163No Hit
TTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCACTGTAGGCACCA18296171.2484088836813199No Hit
ACCGCTTGGGAACACCGCGTGTTGTTGGCCTCTGTAGGCACCATCAATTC13041200.8898447015886293No Hit
ATGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCA12561400.8571063425555476No Hit
TTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCTGTAGGCACCAT12004630.8191160629414398No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGCTGTAGGCACCATCAATTCG10350480.7062478749577551No Hit
ACGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTA10103140.6893710393528313No Hit
AGGTCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAATTC8285920.5653760397653019No Hit
TTGTGCTTTTATTAGGCTAAAACCAAGCGCTGTAGGCACCATCAATTCGT7520330.5131372730038659No Hit
TGTGCTTTTATTAGGCTAAAACCAAGCGCTGTAGGCACCATCAATTCGTA7497600.5115863290671799No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGACTGTAGGCACCATCAATT6416130.43779401321993766No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCTGTAGGCACCA6319380.4311924370706033No Hit
AGCATTGTGATGGCCCTAGCGGGTGTTGACACAATGCTGTAGGCACCATC5409000.369074164255812No Hit
TAACCAAACGTAATGTTACGGTGCCCAAATTAACAACCTGTAGGCACCAT5364670.3660493800625304No Hit
TTTGCCAAAGATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAAT5298340.3615234622745681No Hit
TTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCACC4476790.30546635751502615No Hit
AACTCCATCTAAAACTAAATATAACCATGAGACCGCTGTAGGCACCATCA4460530.3043568833218667No Hit
AACTCCATCTAAAACTAAATATAACCATGAGACCGACTGTAGGCACCATC4248470.2898873201360491No Hit
TAAGGTCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAAT4242510.2894806493985811No Hit
TTGCCAAAGATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAATT4039530.2756306449872953No Hit
AATTAACGATTTAAGTCCTTCTTAAATGAGGCCACTGTAGGCACCATCAA3972130.27103171751995536No Hit
AGGGAATACGGTTCCAATTCCGTAACCTGTTGAGCTGTAGGCACCATCAA3662760.24992236751148417No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGAGCGTCCTGTAGGCACCATCA3646050.24878218831297896No Hit
AAGCATTGTGATGGCCCTAGCGGGTGTTGACACAATGCTGTAGGCACCAT3642650.24855019493925562No Hit
ATGTGCTTTTATTAGGCTAAAACCAAGCGCTGTAGGCACCATCAATTCGT3576540.2440392884872401No Hit
AACTCTAAGCGGTGGATCACTCGGCTCATGGGTCGCTGTAGGCACCATCA3514150.2397822100794161No Hit
AGTTACATATAAAAGCATTATTTAATACAATGACCTGTAGGCACCATCAA3313340.22608027202724204No Hit
CGCTAGTTACATATAAAAGCATTATTTAATACAATGACCTGTAGGCACCA3300680.2252164378768485No Hit
TGAACCAAACGTAATGTTACGGTGCCCAAATTAACAACCTGTAGGCACCA3261230.22252463240820516No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGAGCGCTGTAGGCACCATCAAT3219600.219684078246998No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATTGGACCTGTAGGCACCATCAATT3184250.21727202949372698No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAATTTCTGTAGGCACCATC3066460.20923482376111616No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGCACTGTAGGCACCAT3026080.20647956128142494No Hit
TTTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCAA2997140.20450488827096774No Hit
TGGATAACTGTGGTAATTCTAGAGCTAATACATGCCTGTAGGCACCATCA2973820.20291368666060616No Hit
TGGATAACTGTGGTAATTCTAGAGCTAATACATGCACTGTAGGCACCATC2957460.20179738913292544No Hit
TAACCAAACGTAATGTTACGGTGCCCAAATTAACAACTCCTGTAGGCACC2925110.19959004041529269No Hit
CGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTAT2906610.19832772352885666No Hit
TAACCGCTGAACCACTTTCATGCTTGGGATTGTGAACTGCTGTAGGCACC2829460.19306352094569235No Hit
TCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAATTCGTA2817800.19226792014051158No Hit
AAATTAACGATTTAAGTCCTTCTTAAATGAGGCCACTGTAGGCACCATCA2790750.19042220815250643No Hit
TTTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCAC2720210.18560902798119844No Hit
TGGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCA2703960.1845002361214911No Hit
ATGGCAAATGTGAGATGCAGTGTATGGAGCTGTAGGCACCATCAATTCGT2698680.18413996405876773No Hit
ATGGCAAATGTGAGATGCAGTGTATGGAGCGCTGTAGGCACCATCAATTC2567700.1752027605028006No Hit
AAGGTCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAATT2566250.1751038221522421No Hit
ACCGCTGAACCACTTTCATGCTTGGGATTGTGAACTGCTGTAGGCACCAT2515390.1716334742147212No Hit
TTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCAAT2467430.16836100297831727No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCTGTAGGCACCATC2382640.16257549763772747No Hit
CTGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCA2378960.16232439892734452No Hit
TGTTCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCAC2247550.1533578550329359No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACCTGTAGGCACCATCAATT2246840.15330940935783485No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATTGGACTGTAGGCACCATCAATTC2218970.15140774602675525No Hit
AACTCTAAGCGGTGGATCACTCGGCTCATGGGCTGTAGGCACCATCAATT2210080.15080115158781382No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGAGCTGTAGGCACCATCAATTC2174650.1483836441669258No Hit
TAACGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCG2152150.14684839389963872No Hit
GTGTGCTTTTATTAGGCTAAAACCAAGCGATCGCAAGATCGCTGTAGGCA2098670.14319927459766038No Hit
ACGCGAAGGTCGCGGGTTCGTTCCCCTCATGGGCCACCACTGTAGGCACC2069860.1412334719220808No Hit
ACCAAACGTAATGTTACGGTGCCCAAATTAACAACCTGTAGGCACCATCA2052110.14002233004455433No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGAGCGTCACTGTAGGCACCATC1964460.13404167733665603No Hit
ACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTCTGTAGGCACCATC1931110.13176609527381053No Hit
ACTGCGATCCACTGAAGCTTATCCTTTGCTTGATGATTCGACTGTAGGCA1889740.1289432817823587No Hit
TTGCGGTTAAAACGTTCGTAGTTGAACTTGTGCTGTAGGCACCATCAATT1848990.12616277296493877No Hit
TGGAACGTACCTTGAGCATATATGCTGTGACCCGACTGTAGGCACCATCA1796980.12261395668042319No Hit
CGCTAGTTACATATAAAAGCATTATTTAATACAATGCTGTAGGCACCATC1775790.12116809209536483No Hit
ACCGAAAGGTTGGTGGTTCGTGTCCACCCGGGGGCGCCACTGTAGGCACC1741810.11884952302503529No Hit
AACGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGT1643930.11217084319561046No Hit
ATATAAAATAATCTTATCTGGTAAAGCGCTGTAGGCACCATCAATTCGTA1546010.10548943403237714No Hit
TTTTGCCAAAGATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAA1536840.10486373425677613No Hit
TTTTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCA1507390.1028542622402604No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGCTGTAGGCACCATCAATTC1503720.10260384586332956No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)