FastQCFastQC Report
Mon 25 Sept 2023
SRR942878.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR942878.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91880922
Total Bases4.5 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGCTGTAGGCACCATCAATTCG15900081.730509408688781No Hit
ACGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTA10702511.1648239663942423No Hit
TGCTTGGACTACATATGGTTGAGGGTTGTACTGTAGGCACCATCAATTCG8915980.9703842545245682No Hit
TTTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCAA7481940.814308328338281No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAATTCTGTAGGCACCATCA6927960.7540150718121875No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAACTGTAGGCACCATCAAT6370530.693346329284767No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGCTGTAGGCACCATCAATTC5423870.5903151472511345No Hit
TTTGCCAAAGATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAAT5364480.5838513462022072No Hit
TAACGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCG4968310.5407335812324565No Hit
AGGTCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAATTC4865490.5295430100276965No Hit
TTGTGCTTTTATTAGGCTAAAACCAAGCGCTGTAGGCACCATCAATTCGT4668840.5081403079520687No Hit
ATGTATGTAAGCGTATTACCGGTGGCTGTAGGCACCATCAATTCGTATGC4608400.5015622285549115No Hit
AGTTACATATAAAAGCATTATTTAATACAATGACCTGTAGGCACCATCAA4040660.43977138148439565No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAATCTGTAGGCACCATCAA3452300.3757363253276888No Hit
TTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCAAT3448760.37535104403937086No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACCTGTAGGCACCATCAATT3186650.3468239032255249No Hit
TTTTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCA3073480.3345068740167845No Hit
ACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTCTGTAGGCACCATC3070820.3342173688679354No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATTGGACCTGTAGGCACCATCAATT2983290.3246909080864469No Hit
TAAGGTCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAAT2795200.3042198466401981No Hit
TTATGTATGTAAGCGTATTACCGGTGGCTGTAGGCACCATCAATTCGTAT2685570.29228809871977557No Hit
TGTGCTTTTATTAGGCTAAAACCAAGCGCTGTAGGCACCATCAATTCGTA2508310.2729957368081265No Hit
TTGCCAAAGATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAATT2431320.26461641296982197No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATTGGACTGTAGGCACCATCAATTC2419680.26334955585230196No Hit
ACGCGAAGGTCGCGGGTTCGTTCCCCTCATGGGCCACCACTGTAGGCACC2244910.24432819688074092No Hit
AATTAACGATTTAAGTCCTTCTTAAATGAGGCCACTGTAGGCACCATCAA2118350.230553846640764No Hit
ATTTATCATAAAATATAACTTATAGTTTATTCCTGTAGGCACCATCAATT2035810.22157048010467287No Hit
AAATTAACGATTTAAGTCCTTCTTAAATGAGGCCACTGTAGGCACCATCA1927210.20975083380203782No Hit
AGGTCGTATCCGTGCTGGACTGCAATGATAAATCTGTAGGCACCATCAAT1747640.19020705952428296No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAATTTCTGTAGGCACCATC1736960.18904468546800174No Hit
TTGCGGTTAAAACGTTCGTAGTTGAACTTGTGCCTGTAGGCACCATCAAT1695860.18457150440871717No Hit
TTTTGCCAAAGATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAA1670880.18185276808606687No Hit
CGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTAT1587160.17274097445386977No Hit
ATGTGCTTTTATTAGGCTAAAACCAAGCGCTGTAGGCACCATCAATTCGT1487770.16192371251999407No Hit
TTAACGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTC1476090.16065250194158914No Hit
TCGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTA1386650.1509181634028444No Hit
GCCCGGGTAGCTCAGTCGGTAGAGCATTGGACCTGTAGGCACCATCAATT1378230.15000175988656275No Hit
TGTTACGGTTGTTTCGCAAAAGTTGACCGAACTCTGTAGGCACCATCAAT1360570.14807970690585798No Hit
ATTTATCATAAAATATAACTTATAGTTTATTCTGTAGGCACCATCAATTC1332440.145018135538518No Hit
ACGATGCCAGCTAGCAATTGGGTGTAGCTCTGTAGGCACCATCAATTCGT1314950.1431145847665743No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTGTAGGCACCATCAATTC1274920.1387578587859621No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATTGGCTGTAGGCACCATCAATTCG1225830.13341507391490912No Hit
TTTGCGGTTAAAACGTTCGTAGTTGAACTTGTGCCTGTAGGCACCATCAA1203240.1309564568801345No Hit
ACCGCTTGGGAACACCGCGTGTTGTTGGCCTCTGTAGGCACCATCAATTC1145950.12472121252766707No Hit
TACAACCTCAACTCATATGGGACTACCCCCTGAACTGTAGGCACCATCAA1143250.12442735391793305No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGAGCGCTGTAGGCACCATCAAT1140760.124156350977845No Hit
TCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAATTCGTA1120180.12191649535253901No Hit
AACTCTAAGCGGTGGATCACTCGGCTCATGGGTCGCTGTAGGCACCATCA1071960.11666839825573365No Hit
GCCCGGGTAGCTCAGTCGGTAGAGCATTGGACTGTAGGCACCATCAATTC1063820.11578246896564665No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACCTGTAGGCACCATCAAT1061220.115499494008125No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGAGCGTCCTGTAGGCACCATCA1030280.11213209201361737No Hit
AGTTACATATAAAAGCATTATTTAATACAATGACACTGTAGGCACCATCA1008090.1097170095876922No Hit
TTGCATTGTATGGCTTCTAAACCATTTAAAGTTTACTGTAGGCACCATCA959920.10447435431699303No Hit
TGCCCGGATAGCTCAGTCGGTAGAGCATTGGACCTGTAGGCACCATCAAT922720.10042563569399098No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)