FastQCFastQC Report
Mon 25 Sept 2023
SRR942879.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR942879.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67445988
Total Bases3.3 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTATGTAAGCGTATTACCGGTGGCTGTAGGCACCATCAATTCGTATGC15301002.268630122224616No Hit
TGCTTGGACTACATATGGTTGAGGGTTGTACTGTAGGCACCATCAATTCG14209282.106764304497993No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGCTGTAGGCACCATCAATTCG13706922.032281000909943No Hit
ACGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTA9377521.3903747692153312No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGCTGTAGGCACCATCAATTC4935270.7317366305020249No Hit
TTGTGCTTTTATTAGGCTAAAACCAAGCGCTGTAGGCACCATCAATTCGT4778320.7084661581353067No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAACTGTAGGCACCATCAAT3918600.5809982352100765No Hit
TTATGTATGTAAGCGTATTACCGGTGGCTGTAGGCACCATCAATTCGTAT3688270.5468479459445387No Hit
AGGTCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAATTC3298830.48910692805033856No Hit
TTTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCAA3240040.48039032358752015No Hit
TAACGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCG3200820.4745753001646295No Hit
TTGTATGTAAGCGTATTACCGGTGGCTGTAGGCACCATCAATTCGTATGC3187220.4725588718486858No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAATTCTGTAGGCACCATCA2818490.41788845913266187No Hit
TTTGCCAAAGATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAAT2728990.40461858161229697No Hit
TGTGCTTTTATTAGGCTAAAACCAAGCGCTGTAGGCACCATCAATTCGTA2720900.40341910329788633No Hit
CGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTAT2248680.3334045606982583No Hit
AGTTACATATAAAAGCATTATTTAATACAATGACCTGTAGGCACCATCAA1982310.2939107363954695No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAATCTGTAGGCACCATCAA1899170.2815838356463842No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATTGGACCTGTAGGCACCATCAATT1711810.2538045702585008No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATTGGACTGTAGGCACCATCAATTC1705410.2528556628157037No Hit
ACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTCTGTAGGCACCATC1692530.2509459865870747No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACCTGTAGGCACCATCAATT1690700.2506746583651499No Hit
TTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCAAT1657890.24581002505293567No Hit
TAAGGTCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAAT1563580.23182698428259366No Hit
TCGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTA1557890.2309833462592319No Hit
TTGCCAAAGATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAATT1420290.21058183623909552No Hit
TTTGGGAACACCGCGTGTTGTTGGCCTCTGTAGGCACCATCAATTCGTAT1335470.19800584728627596No Hit
ATGTGCTTTTATTAGGCTAAAACCAAGCGCTGTAGGCACCATCAATTCGT1256250.1862601523459038No Hit
TCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAATTCGTA1224120.1814963404494868No Hit
AATTAACGATTTAAGTCCTTCTTAAATGAGGCCACTGTAGGCACCATCAA1124720.16675862172854522No Hit
TTTTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCA1094290.16224686337162117No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATTGGCTGTAGGCACCATCAATTCG1070160.15866918577870043No Hit
ATTTATCATAAAATATAACTTATAGTTTATTCCTGTAGGCACCATCAATT1038630.15399433395504564No Hit
ACCGCTTGGGAACACCGCGTGTTGTTGGCCTCTGTAGGCACCATCAATTC961870.1426133753129986No Hit
TTGCGGTTAAAACGTTCGTAGTTGAACTTGTGCCTGTAGGCACCATCAAT943780.13993122911921757No Hit
ACGCGAAGGTCGCGGGTTCGTTCCCCTCATGGGCCACCACTGTAGGCACC929630.1378332540699085No Hit
AAATTAACGATTTAAGTCCTTCTTAAATGAGGCCACTGTAGGCACCATCA913000.13536757738651556No Hit
TTAACGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTC899450.1333585624099687No Hit
TTGTGCTTTTATTAGGCTAAAACCAAGCTGTAGGCACCATCAATTCGTAT896300.13289152202796703No Hit
ACGATGCCAGCTAGCAATTGGGTGTAGCTCTGTAGGCACCATCAATTCGT877960.13017230913720176No Hit
AGCTATAAAATAAATTTTTAAAAATATTCTGTAGGCACCATCAATTCGTA852200.12635295667994367No Hit
AGGTCGTATCCGTGCTGGACTGCAATGATAAATCTGTAGGCACCATCAAT851950.1263158899829594No Hit
GCCCGGGTAGCTCAGTCGGTAGAGCATTGGACCTGTAGGCACCATCAATT810030.12010054623263877No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTGTAGGCACCATCAATTC795670.11797143515786292No Hit
TCTGCTTGGACTACATATGGTTGAGGGTTGTACTGTAGGCACCATCAATT792110.11744360539280706No Hit
ATTTATCATAAAATATAACTTATAGTTTATTCTGTAGGCACCATCAATTC788390.11689205294168128No Hit
CGCCCGGCTAGCTCAGTCGGTAGAGCATGAGCTGTAGGCACCATCAATTC773560.11469325647657501No Hit
ATCAGTTATGGTTCCTTAGATCGTTCTGTAGGCACCATCAATTCGTATGC769780.11413280801817301No Hit
TTTTGCCAAAGATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAA763160.11315128188202982No Hit
GCCCGGGTAGCTCAGTCGGTAGAGCATTGGACTGTAGGCACCATCAATTC752910.11163154730567516No Hit
TTTTTGAACGCATATCGCAGTCCATGCTGCTGTAGGCACCATCAATTCGT749870.1111808162703466No Hit
TTATAAGCATATGGTATATTATTGGATAAACTGTAGGCACCATCAATTCG724830.10746821590040315No Hit
TGCATTTTAACACAGAATAAATGTTATCTGTAGGCACCATCAATTCGTAT710920.10540582488019895No Hit
TTGGGAACACCGCGTGTTGTTGGCCTCTGTAGGCACCATCAATTCGTATG708220.10500550455276896No Hit
TGTATGTAAGCGTATTACCGGTGGCTGTAGGCACCATCAATTCGTATGCC691620.10254427587301414No Hit
TGTTACGGTTGTTTCGCAAAAGTTGACCGAACTCTGTAGGCACCATCAAT678420.10058715427224522No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)