FastQCFastQC Report
Mon 25 Sept 2023
SRR942881.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR942881.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76934548
Total Bases3.8 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGCTGTAGGCACCATCAATTCG23947843.1127550135213635No Hit
ACGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTA14339911.8639103462335282No Hit
TGCTTGGACTACATATGGTTGAGGGTTGTACTGTAGGCACCATCAATTCG13099421.7026706909358849No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGCTGTAGGCACCATCAATTC7858291.0214253809614895No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAATCTGTAGGCACCATCAA4694450.6101875063982959No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATTGGCTGTAGGCACCATCAATTCG4535470.589523187944121No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAACTGTAGGCACCATCAAT4283730.5568018674783142No Hit
CGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTAT4113290.5346479711559493No Hit
TTTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCAA4110600.5342983232968367No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGAATTCTGTAGGCACCATCA4064450.5282997178328779No Hit
AATTAACGATTTAAGTCCTTCTTAAATGAGGCCACTGTAGGCACCATCAA4040950.525245173338771No Hit
TTGTGCTTTTATTAGGCTAAAACCAAGCGCTGTAGGCACCATCAATTCGT4031720.5240454522459793No Hit
TAACGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCG3980480.5173852454426586No Hit
TTGTATGGCTTCTAAACCATTTAAAGTTTACTGTAGGCACCATCAATTCG3967130.5156500042087724No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGAGCTGTAGGCACCATCAATTC3423110.4449379490732824No Hit
AGGTCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAATTC3313750.43072326882325995No Hit
TTTGCCAAAGATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAAT3143170.40855117521454726No Hit
ACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTCTGTAGGCACCATC2897470.37661493767403426No Hit
AAATTAACGATTTAAGTCCTTCTTAAATGAGGCCACTGTAGGCACCATCA2864360.3723112794527629No Hit
TTTGGGAACACCGCGTGTTGTTGGCCTCTGTAGGCACCATCAATTCGTAT2803880.3644500517504828No Hit
TTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCAAT2791480.3628382921025285No Hit
TCGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTCGTA2428360.31563973054082284No Hit
TTGCGGTTAAAACGTTCGTAGTTGAACTTGTGCTGTAGGCACCATCAATT2408740.31308951083978553No Hit
ATGGCAAATGTGAGATGCAGTGTATGGAGCTGTAGGCACCATCAATTCGT2235830.2906145623939975No Hit
GCCCGGGTAGCTCAGTCGGTAGAGCATTGGCTGTAGGCACCATCAATTCG2186510.28420391837487624No Hit
TGTGCTTTTATTAGGCTAAAACCAAGCGCTGTAGGCACCATCAATTCGTA2186270.28417272302685137No Hit
TTGCCAAAGATGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAATT2106110.27375347678652767No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGAGCGCTGTAGGCACCATCAAT2026760.26343951484578815No Hit
ACCGCTTGGGAACACCGCGTGTTGTTGGCCTCTGTAGGCACCATCAATTC2026110.2633550274448873No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATTGGACTGTAGGCACCATCAATTC2005340.2606553300345639No Hit
TTGAATTATTTAGTGAGGTCTCCGGACGTGCTGTAGGCACCATCAATTCG1979110.2572459384566736No Hit
AGTTACATATAAAAGCATTATTTAATACAATGCTGTAGGCACCATCAATT1827700.2375655732714515No Hit
TGTATGGCTTCTAAACCATTTAAAGTTTACTGTAGGCACCATCAATTCGT1712840.22263599962919128No Hit
AGGGAATACGGTTCCAATTCCGTAACCTGTTGAGCTGTAGGCACCATCAA1676480.21790990440341573No Hit
TAAGGTCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAAT1664480.21635013700216968No Hit
TACACACAGGGACAGCAAAAGCTCGGCCTATCGCTGTAGGCACCATCAAT1579920.2053589760480558No Hit
TTGTGCTTTTATTAGGCTAAAACCAAGCTGTAGGCACCATCAATTCGTAT1525100.19823343863669676No Hit
TGCACGCGCGCTACAATGAAAGTATCAACGCTGTAGGCACCATCAATTCG1480510.19243760293489995No Hit
TTTGCGGTTAAAACGTTCGTAGTTGAACTTGTGCTGTAGGCACCATCAAT1464720.19038520899609365No Hit
TCGTATCCGTGCTGGACTGCAATGATAACTGTAGGCACCATCAATTCGTA1450170.1884939910220828No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGAGCGTCCTGTAGGCACCATCA1417810.18428781826338927No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACCTGTAGGCACCATCAATT1380140.17939144842964438No Hit
TGCCCGGATAGCTCAGTCGGTAGAGCATTGGCTGTAGGCACCATCAATTC1366390.17760421494904993No Hit
CGCCCGGCTAGCTCAGTCGGTAGAGCATGAGCTGTAGGCACCATCAATTC1323020.17196695559971314No Hit
ATTTAGAAATTATAAATTTACTTAATTATTCTGTAGGCACCATCAATTCG1295810.1684301830173877No Hit
ATGTATGTAAGCGTATTACCGGTGGCTGTAGGCACCATCAATTCGTATGC1276650.16593975440006486No Hit
ATGTGCTTTTATTAGGCTAAAACCAAGCGCTGTAGGCACCATCAATTCGT1226940.15947841794040307No Hit
TACAACCTCAACTCATATGGGACTACCCCCTGAACTGTAGGCACCATCAA1204960.15662144398378736No Hit
TTGGCAAATGTGAGATGCAGTGTATGGAGCTGTAGGCACCATCAATTCGT1161520.15097508599127665No Hit
TTCGCAAAAGTTGACCGAACTTGATTATTTAGCTGTAGGCACCATCAATT1143870.14868092810527725No Hit
GGCTCGTTGGTCTAGGGGTATGATTTCCGCTTCTGTAGGCACCATCAATT1141510.14837417384969884No Hit
TTGGGAACACCGCGTGTTGTTGGCCTCTGTAGGCACCATCAATTCGTATG1139310.14808821649280374No Hit
ACAACCTCAACTCATATGGGACTACCCCCTGACTGTAGGCACCATCAATT1113220.14469702220126127No Hit
TCGCAAAAGTTGACCGAACTTGATTATTTAGCTGTAGGCACCATCAATTC1041390.1353605144986359No Hit
ATTGAATTATTTAGTGAGGTCTCCGGACGTGCTGTAGGCACCATCAATTC984510.12796721701672958No Hit
ACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTCTGTAGGCACCATCA978380.12717043583592638No Hit
ATATGGCAAATGTGAGATGCAGTGTATGGACTGTAGGCACCATCAATTCG947320.12313323787903453No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATTGGACCTGTAGGCACCATCAATT947290.1231293384605314No Hit
CGCTAGTTACATATAAAAGCATTATTTACTGTAGGCACCATCAATTCGTA934850.12151237958790634No Hit
ATTGAATTATTTAGTGAGGTCTCCGGACGTGACTGTAGGCACCATCAATT905450.1176909494548535No Hit
TTAACGATGCCAGCTAGCAATTGGGTGTAGCCTGTAGGCACCATCAATTC880130.11439984023822432No Hit
GCCCGGGTAGCTCAGTCGGTAGAGCATTGGACTGTAGGCACCATCAATTC878680.11421136834390709No Hit
ACGCGCGCTACAATGAAAGTATCAACGCTGTAGGCACCATCAATTCGTAT841440.10937089017537349No Hit
TGCACGCGCGCTACAATGAAAGTATCAACGTGCTGTAGGCACCATCAATT819300.10649311932007452No Hit
AAAATTAACGATTTAAGTCCTTCTTAAATGAGGCCACTGTAGGCACCATC808260.10505813331092813No Hit
AGCTATAAAATAAATTTTTAAAAATATTCTGTAGGCACCATCAATTCGTA804970.10463049708175319No Hit
ATGGCAAATGTGAGATGCAGTGTATGGAGCGCTGTAGGCACCATCAATTC791410.10286795991834513No Hit
TTTTGCCAAAGATGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCA779950.10137838205015516No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)