FastQCFastQC Report
Tue 18 Jul 2023
SRR9596289_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9596289_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35964079
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC3772861.0490634279832385TruSeq Adapter, Index 6 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG638650.17757996805645987No Hit
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG532550.14807830891484805No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)