FastQCFastQC Report
Fri 14 Jul 2023
SRR9596300_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9596300_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44614079
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length52
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGTCTT740710.1660260654489808TruSeq Adapter, Index 1 (100% over 48bp)
ACGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGTCTT554970.12439346781091233TruSeq Adapter, Index 1 (98% over 50bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)