FastQCFastQC Report
Sat 30 Sept 2023
SRR9641410.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9641410.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39084693
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length42
%GC64

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTAGGCACCATCAATTCGTATGCCGTCTTCTGCTTGAAAA17649534.515714118568106Illumina Single End Adapter 1 (95% over 22bp)
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCAC6401831.637937900650774No Hit
TCGGGGCCCGGTGGGGGGCGGGGCGGACTGTCTGTAGGCACC5678391.4528424209446906No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCA5198031.3299400867751474No Hit
CGGGGCCCGGTGGGGGGCGGGGCGGACTGTCTGTAGGCACCA5083131.3005423888067893No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACACTGTAGGCA4020331.0286200789654405No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCAC3996701.0225742338567172No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACCTGTAGGCAC3453440.8835786429229467No Hit
TTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACC2284990.5846252905197439No Hit
TCGGGGCCCGGTGGGGGGCGGGGCGGACTGTCCCTGTAGGCA2120230.5424706802737328No Hit
CCTGTAGGCACCATCAATTCGTATGCCGTCTTCTGCTTGAAA2104770.5385151675618893Illumina Single End Adapter 1 (95% over 22bp)
CGGGGCCCGGTGGGGGGCGGGGCGGACTGTCCCTGTAGGCAC1895870.4850671335706795No Hit
TCGGGGCCCGGTGGGGGGCGGGGCGGACTGTCCTGTAGGCAC1894430.4846987028911804No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACTGTAGGCACC1875840.4799423651607037No Hit
CGGGGCCCGGTGGGGGGCGGGGCGGACTGTCCTGTAGGCACC1633470.41793087641752746No Hit
GGGGGCCCGGTGGGGGGCGGGGCGGACTGTCTGTAGGCACCA1531980.3919641891520038No Hit
TAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACACTGTAGGC1505620.3852198608800637No Hit
TAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACCTGTAGGCA1370530.3506564577595633No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCA1284840.3287322737829871No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTCTCC1252670.3205014300611239No Hit
TGGGCCCGGTGGGGGGCGGGGCGGACTGTCTGTAGGCACCAT1217980.3116258326501375No Hit
GGGGCCCGGTGGGGGGCGGGGCGGACTGTCTGTAGGCACCAT1162510.2974335758502696No Hit
TCGGGGCCCGGTGGGGGGCGGGGCGGACTGCTGTAGGCACCA1131550.28951231624104096No Hit
TGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTGTAGGCACCAT1074390.2748876651020388No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCCTGTAGGCACCATC1067170.27304039461177293No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGACTGTAGGCA1035440.2649221269308678No Hit
CGGGGCCCGGTGGGGGGCGGGGCGGACTGCTGTAGGCACCAT1001670.25628191578733905No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG967120.24744213802574835No Hit
TGGCCCGGTGGGGGGCGGGGCGGACTGTCTGTAGGCACCATC964040.24665410573904215No Hit
TAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACTGTAGGCAC828720.21203185605167732No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAACTGTAGGC820730.20998757748973493No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCA790870.2023477579829014No Hit
ACCTGTAGGCACCATCAATTCGTATGCCGTCTTCTGCTTGAA788450.20172858975763225Illumina Single End Adapter 1 (95% over 22bp)
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTGTAG763860.19543712419590964No Hit
CCGTCCCCGCTCGGCGGGGTCCCCGCGTCGCTGTAGGCACCA750430.19200099640030432No Hit
TGGGGCCCGGTGGGGGGCGGGGCGGACTGTCTGTAGGCACCA734460.18791499782280494No Hit
TCGGCGGCGGCGGCGACTCTGGACGCGAGCCCTGTAGGCACC662390.16947555402315684No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATC656910.1680734706039523No Hit
TGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATC656530.16797624584130671No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCA621350.15897527965743521No Hit
CGGTGGGGGGCGGGGCGGACTGTCTGTAGGCACCATCAATTC594380.1520748800559851No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACC579760.14833428524051603No Hit
GCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCAC577330.14771255846886144No Hit
TCCTCCCGACCCCTCCACCCGCGCGTCGCTGTAGGCACCATC552600.1413852732577431No Hit
CCGGGGCCCGGTGGGGGGCGGGGCGGACTGTCTGTAGGCACC540120.13819220736875176No Hit
GCGGGGCCCGGTGGGGGGCGGGGCGGACTGTCTGTAGGCACC531420.13596627201344527No Hit
GGGGGCCCGGTGGGGGGCGGGGCGGACTGTCCCTGTAGGCAC515280.13183677814739392No Hit
TCGGGTCGGGGGTCGGCGCGCGGCGCGGGCTGTAGGCACCAT514360.13160139187993622No Hit
CCGGTGGGGGGCGGGGCGGACTGTCTGTAGGCACCATCAATT497360.12725186302473965No Hit
GGGGGCCCGGTGGGGGGCGGGGCGGACTGTCCTGTAGGCACC486370.1244400205471743No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGCTGTAGGCAC470500.12037960743352903No Hit
TCCGGTGGGGGGCGGGGCGGACTGTCTGTAGGCACCATCAAT468250.11980393449681184No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCAT455450.11652899512348736No Hit
TCGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGACTGTAG450540.11527274884825114No Hit
GGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTGTAGGCACCAT441100.11285748106042434No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCTGTAGG433380.11088228325088802No Hit
TGGCCCGGTGGGGGGCGGGGCGGACTGTCCCTGTAGGCACCA431750.11046524019006623No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCA431240.11033475432441033No Hit
GCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCA417540.10682954577639896No Hit
TGGGCCCGGTGGGGGGCGGGGCGGACTGTCCCTGTAGGCACC414900.1061540895306508No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTCTGTAGGCA414470.10604407203607816No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCCTGTA413760.10586241524271407No Hit
TGGCCCGGTGGGGGGCGGGGCGGACTGTCCTGTAGGCACCAT408380.10448591728736362No Hit
ACACATTGATCATCGACACTTCGAACGCACTGTAGGCACCAT401330.10268214208564974No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)