FastQCFastQC Report
Fri 29 Sept 2023
SRR9730175.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9730175.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2989877
Total Bases119.5 Mbp
Sequences flagged as poor quality0
Sequence length40
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATTTTGGGAAAAAAAAAAAAAATACATTCCAAAATTCGT69850.23362165065653204No Hit
GAGTTTTGGAAAAAAAAAAAAAATACATTCCAAAATTCGT64470.21562759939622936No Hit
GATTTTTGGAAAAAAAAAAAAAATACATTCCAAAATTCGT63830.21348704311247588No Hit
GATTTTGGGAAAAAAAAAAAAAATACATTCCAAAATTCGT52630.17602730814679No Hit
ATTTTGGAGAAAAAAAAAAAAAATACATTCCAAAATTCGT38900.13010568662189115No Hit
GCAAGCAGGAAAAAAAAAAAAAATACATTCCAAAATTCGT38620.129169193247749No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)