FastQCFastQC Report
Thu 28 Sept 2023
SRR9730187.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9730187.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences158035420
Total Bases6.3 Gbp
Sequences flagged as poor quality0
Sequence length40
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTTTTGGAAAAAAAAAAAAAATACATTCCAAAATTCGT2429150.15370921278280528No Hit
GAGTTTTGGAAAAAAAAAAAAAATACATTCCAAAATTCGT2294380.1451813776936841No Hit
AATTTTGGGAAAAAAAAAAAAAATACATTCCAAAATTCGT1956420.12379629832350242No Hit
GATTTTGGGAAAAAAAAAAAAAATACATTCCAAAATTCGT1941760.12286865817802112No Hit
GCAAGCAGGAAAAAAAAAAAAAATACATTCCAAAATTCGT1709110.10814727483243947No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)