FastQCFastQC Report
Thu 28 Sept 2023
SRR9730189.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9730189.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55346922
Total Bases2.2 Gbp
Sequences flagged as poor quality0
Sequence length40
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGTTAAGGCATTAACGCGAACTCGGCCTACAATAGTGA837810.15137427154485664No Hit
CTATTGTAGGCATTAACGCGAACTCGGCCTACAATAGTGA607010.10967366893501322No Hit
CGCGTTAAGGCATTAACGCGAACTCGGCCTACAATAGTGA566790.10240677882683341No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)