FastQCFastQC Report
Thu 28 Sept 2023
SRR9730205.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9730205.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1119153
Total Bases44.7 Mbp
Sequences flagged as poor quality0
Sequence length40
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTACACAGCGTGTACTCCGAAGAGGATCCAAACTCGTA13880.12402236334084794No Hit
GAGTTTTGGAAAAAAAAAAAAAATACATTCCAAAATTCGT11930.10659847223748675No Hit
AGCCGAGTGGCATTAACGCGAACTCGGCCTACAATAGTTC11740.1049007597710054No Hit
GATTTTTGGAAAAAAAAAAAAAATACATTCCAAAATTCGT11620.10382852031849087No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)