ERR6109836 (PRJEB45876)
Processing Status: Completed
General Details
| Sample Name | SAMEA9252524 |
|---|---|
| Organism | Chlorocebus sabaeus |
| Release Date | 3/2022 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
Run Details
| Spots | 74382591 |
|---|---|
| Total Bases | 5653076916 |
| Total Bases | 5653076916 |
Repository Details
| SRA | ERR6109836 |
|---|---|
| ENA | ERR6109836 |
| BioProject | PRJEB45876 |
Experiment Details
| Title | CHX_Ribo_8hpi_WT_1 |
|---|
Sample Details
| Run Accession | ERR6109836 |
|---|---|
| Total Number Of Spots (Original File)) | 74382591 |
| Total Number Of Bases (Original File) | 5653076916 |
| Average Read Length | 76 |
| Original File Size (Mb) | 1872 |
| Experiment Id | ERX5747057 |
| Library Name | CHX_Ribo_8hpi_WT_1_s |
| Library Strategy | OTHER |
| Library Selection | size fractionation |
| Library Source | TRANSCRIPTOMIC |
| Library Layout | SINGLE |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | ILLUMINA |
| Model | NextSeq 500 |
| Sra Project Accession (Srp) | ERP130048 |
| Pubmed Id | <NA> |
| Sample | ERS6987127 |
| Biosample | SAMEA9252524 |
| Sample Type | simple |
| Organism Taxid | 60711 |
| Organism | Chlorocebus sabaeus |
| Sample Name | SAMEA9252524 |
| Center Name | Division of Virology, Department of Pathology, University of Cambridge |
| Submission | ERA4939871 |
| Month | 3 |
| Year | 2022 |
| Author | 0.0 |
| Sample Source | 0.0 |
| Sample Title | CHX_Ribo_8hpi_WT_1 |
| Library-Type | Ribo-Seq |
| Replicate-Number | 0.0 |
| Condition | Wild Type |
| Inhibitor | Cycloheximide |
| Timepoint | 8h |
| Tissue | Kidney |
| Cell-Line | MA-104_MA-104kidney cell |
| Cellular-Compartment | 0.0 |
| Stage | late embryo |
| Gene | 0.0 |
| Sex | 0.0 |
| Strain | 0.0 |
| Age | 0.0 |
| Infected | PRRSV-1 WTPRRSV-1 WT |
| Disease | 0.0 |
| Genotype | 0.0 |
| Feeding | 0.0 |
| Temperature | 0.0 |
| Sirna | 0.0 |
| Sgrna | 0.0 |
| Shrna | 0.0 |
| Plasmid | 0.0 |
| Growth-Condition | 0.0 |
| Stress | 0.0 |
| Cancer | normal |
| Microrna | 0.0 |
| Individual | 0.0 |
| Antibody Used | 0.0 |
| Ethnicity | 0.0 |
| Dose | 100 |
| Stimulation | 0.0 |
| Host Organism | 0.0 |
| Unique Molecular Identifier (Umi) | 0.0 |
| Adapter Sequence | 0.0 |
| Mode Of Separation | 0.0 |
| Mode Of Rrna Depletion | 0.0 |
| Barcode Information | 0.0 |
| Nucelase Used | 0.0 |
| Kit Used | 0.0 |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ERR6109836 | Chlorocebus sabaeus | 0.0 | MA-104_MA-104kidney cell | Ribo-Seq | Cycloheximide |  |
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| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
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