SRR10240642 (PRJNA576260)

Processing Status: Completed

General Details

View quality reports

Sample Name GSM4110756
Organism Homo sapiens
Release Date 1/2020

Sample Links

Run Details

Spots 42310172
Total Bases 1271011461
Total Bases 1271011461

Repository Details

SRA SRR10240642
ENA SRR10240642
BioProject PRJNA576260

Experiment Details

Title RPF_PDCD4-KD_rep2

Sample Details

Run Accession SRR10240642
Total Number Of Spots (Original File)) 42310172
Total Number Of Bases (Original File) 1271011461
Average Read Length 30
Original File Size (Mb) 571
Experiment Id SRX6959644
Library Name 0.0
Library Strategy OTHER
Library Selection other
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina HiScanSQ
Sra Project Accession (Srp) SRP224660
Pubmed Id 32066800
Sample SRS5486437
Biosample SAMN12985345
Sample Type simple
Organism Taxid 9606
Organism Homo sapiens
Sample Name GSM4110756
Center Name GEO
Submission SRA974338
Month 1
Year 2020
Author Haas
Sample Source hTERT-RPE-1
Sample Title RPF_PDCD4-KD_rep2
Library-Type Ribo-Seq
Replicate-Number 2.0
Condition Test
Inhibitor Cycloheximide
Timepoint NANA12-14
Tissue Retina
Cell-Line hTERT_RPE1
Cellular-Compartment Endoplasmic reticulum
Stage 0.0
Gene 0.0
Sex 0.0
Strain 0.0
Age 0.0
Infected 0.0
Disease 0.0
Genotype 0.0
Feeding 0.0
Temperature 0.0
Sirna 0.0
Sgrna 0.0
Shrna 0.0
Plasmid 0.0
Growth-Condition 0.0
Stress 0.0
Cancer 0.0
Microrna 0.0
Individual 0.0
Antibody Used 0.0
Ethnicity 0.0
Dose 0.0
Stimulation 0.0
Host Organism 0.0
Unique Molecular Identifier (Umi) 0.0
Adapter Sequence 0.0
Mode Of Separation 0.0
Mode Of Rrna Depletion 0.0
Barcode Information 0.0
Nucelase Used 0.0
Kit Used 0.0
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR10240642 Homo sapiens hTERT-RPE-1 hTERT_RPE1 Ribo-Seq Cycloheximide
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

ⓘ For more Information on the columns shown here see: About