SRR10240643 (PRJNA576260)
Processing Status: Completed
General Details
| Sample Name | GSM4110757 |
|---|---|
| Organism | Homo sapiens |
| Release Date | 1/2020 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
| Visit GWIPS-viz |
Run Details
| Spots | 34963413 |
|---|---|
| Total Bases | 1048923656 |
| Total Bases | 1048923656 |
Repository Details
| SRA | SRR10240643 |
|---|---|
| ENA | SRR10240643 |
| BioProject | PRJNA576260 |
Experiment Details
| Title | RPF_PDCD4-KD_rep3 |
|---|
Sample Details
| Run Accession | SRR10240643 |
|---|---|
| Total Number Of Spots (Original File)) | 34963413 |
| Total Number Of Bases (Original File) | 1048923656 |
| Average Read Length | 30 |
| Original File Size (Mb) | 476 |
| Experiment Id | SRX6959645 |
| Library Strategy | OTHER |
| Library Selection | other |
| Library Source | TRANSCRIPTOMIC |
| Library Layout | SINGLE |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | ILLUMINA |
| Model | Illumina HiScanSQ |
| Sra Project Accession (Srp) | SRP224660 |
| Pubmed Id | 32066800 |
| Sample | SRS5486438 |
| Biosample | SAMN12985344 |
| Sample Type | simple |
| Organism Taxid | 9606 |
| Organism | Homo sapiens |
| Sample Name | GSM4110757 |
| Center Name | GEO |
| Submission | SRA974338 |
| Month | 1 |
| Year | 2020 |
| Author | Haas |
| Sample Source | hTERT-RPE-1 |
| Sample Title | RPF_PDCD4-KD_rep3 |
| Library-Type | Ribo-Seq |
| Replicate-Number | 3.0 |
| Condition | Test |
| Timepoint | 12-14 |
| Tissue | Retina |
| Cell-Line | hTERT-immortalized retinal pigment epithelial cell line |
| Cellular-Compartment | Endoplasmic reticulum |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR10240643 | Homo sapiens | hTERT-RPE-1 | hTERT-immortalized retinal pigment epithelial cell line | Ribo-Seq |  |
 |
 |
 |
|
|
|||
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
ⓘ For more Information on the columns shown here see: About