SRR10491340 (PRJNA590503)

Processing Status: Completed

General Details

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Sample Name HCT116_SHMT2_2
Organism Homo sapiens
Release Date 1/2020

Sample Links

Run Details

Spots 46228496
Total Bases 3467137200
Total Bases 3467137200

Repository Details

SRA SRR10491340
ENA SRR10491340
BioProject PRJNA590503

Experiment Details

Title MitoRiboSeq SHMT2 del 2

Sample Details

Run Accession SRR10491340
Total Number Of Spots (Original File)) 46228496
Total Number Of Bases (Original File) 3467137200
Average Read Length 75
Original File Size (Mb) 1487
Experiment Id SRX7180458
Library Name mito_t2_2
Library Strategy RNA-Seq
Library Selection MNase
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina HiSeq 2500
Sra Project Accession (Srp) SRP230533
Pubmed Id <NA>
Sample SRS5687200
Biosample SAMN13331088
Sample Type simple
Organism Taxid 9606
Organism Homo sapiens
Sample Name HCT116_SHMT2_2
Center Name Princeton University
Submission SRA998619
Month 1
Year 2020
Sample Title MitoRiboSeq SHMT2 del 2
Library-Type Ribo-Seq
Replicate-Number 2.0
Tissue Colon
Cell-Line HCT116
Cellular-Compartment Mitochondrial
Stage adult
Sex male
Strain SHMT2 deletion
Age not applicable
Genotype shmt2 deletion
Cancer colorectal carcinoma
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR10491340 Homo sapiens HCT116 Ribo-Seq
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

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