SRR12017640 (PRJNA639554)

Processing Status: Completed

General Details

View quality reports

Sample Name Rep1_FootPrint_IAA_15m
Organism Solanum lycopersicum
Release Date 8/2020

Sample Links

Run Details

Spots 62899982
Total Bases 4780398632
Total Bases 4780398632

Repository Details

SRA SRR12017640
ENA SRR12017640
BioProject PRJNA639554

Experiment Details

Title 1R_A15

Sample Details

Run Accession SRR12017640
Total Number Of Spots (Original File)) 62899982
Total Number Of Bases (Original File) 4780398632
Average Read Length 76
Original File Size (Mb) 1819
Experiment Id SRX8550139
Library Name 1R_A15
Library Strategy OTHER
Library Selection other
Library Source OTHER
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model NextSeq 500
Sra Project Accession (Srp) SRP267387
Pubmed Id <NA>
Sample SRS6844115
Biosample SAMN15239069
Sample Type simple
Organism Taxid 4081
Organism Solanum lycopersicum
Sample Name Rep1_FootPrint_IAA_15m
Center Name North Carolina State University
Submission SRA1087158
Month 8
Year 2020
Author 0.0
Sample Source 0.0
Sample Title 1R_A15
Library-Type Ribo-Seq
Replicate-Number Replicate 1NA
Condition Test
Inhibitor 0.0
Timepoint NANA
Tissue Seedling
Cell-Line 0.0
Cellular-Compartment 0.0
Stage Seven-day-old etiolated seedling
Gene 0.0
Sex 0.0
Strain Heinz 1706
Age 0.0
Infected 0.0
Disease 0.0
Genotype 0.0
Feeding 0.0
Temperature 0.0
Sirna 0.0
Sgrna 0.0
Shrna 0.0
Plasmid 0.0
Growth-Condition 0.0
Stress 0.0
Cancer 0.0
Microrna 0.0
Individual 0.0
Antibody Used 0.0
Ethnicity 0.0
Dose 0.0
Stimulation 0.0
Host Organism 0.0
Unique Molecular Identifier (Umi) 0.0
Adapter Sequence 0.0
Mode Of Separation 0.0
Mode Of Rrna Depletion 0.0
Barcode Information 0.0
Nucelase Used 0.0
Kit Used 0.0
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR12017640 Solanum lycopersicum 0.0 0.0 Ribo-Seq 0.0
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

ⓘ For more Information on the columns shown here see: About