SRR12343641 (PRJNA649426)

General Details

View quality reports

Sample Name IAA30_FP_r3T
Organism Arabidopsis thaliana
Release Date 7/2020

Sample Links

Run Details

Spots 130244408
Total Bases 14850114226
Total Bases 14850114226

Repository Details

SRA SRR12343641
ENA SRR12343641
BioProject PRJNA649426

Experiment Details

Title Ribo footprint samples of auxin treated seedlings at 30mins-Replicate 3

Sample Details

Run Accession SRR12343641
Total Number Of Spots (Original File)) 130244408
Total Number Of Bases (Original File) 14850114226
Average Read Length 114
Original File Size (Mb) 4865
Experiment Id SRX8843378
Library Name IAA30_FP_r3T
Library Strategy OTHER
Library Selection cDNA
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model NextSeq 500
Sra Project Accession (Srp) SRP274100
Pubmed Id <NA>
Sample SRS7106437
Biosample SAMN15666681
Sample Type simple
Organism Taxid 3702
Organism Arabidopsis thaliana
Sample Name IAA30_FP_r3T
Center Name North Carolina State University
Submission SRA1105201
Month 7
Year 2020
Sample Title Ribo footprint samples of auxin treated seedlings at 30mins-Replicate 3
Library-Type Ribo-Seq
Replicate-Number 3.0
Condition Test
Tissue Seedling
Cellular-Compartment Auxin
Stage Etiolated seedling
Age Three-day-old
Temperature 22C
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR12343641 Arabidopsis thaliana Ribo-Seq
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

ⓘ For more Information on the columns shown here see: About