SRR12343654 (PRJNA649426)

Processing Status: Completed

General Details

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Sample Name IAA1_FP_r3T
Organism Arabidopsis thaliana
Release Date 7/2020

Sample Links

Run Details

Spots 142215977
Total Bases 16771880544
Total Bases 16771880544

Repository Details

SRA SRR12343654
ENA SRR12343654
BioProject PRJNA649426

Experiment Details

Title Ribo footprint samples of auxin treated seedlings at 1h-Replicate 3

Sample Details

Run Accession SRR12343654
Total Number Of Spots (Original File)) 142215977
Total Number Of Bases (Original File) 16771880544
Average Read Length 117
Original File Size (Mb) 5037
Experiment Id SRX8843365
Library Name IAA1_FP_r3T
Library Strategy OTHER
Library Selection cDNA
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model NextSeq 500
Sra Project Accession (Srp) SRP274100
Pubmed Id <NA>
Sample SRS7106424
Biosample SAMN15666669
Sample Type simple
Organism Taxid 3702
Organism Arabidopsis thaliana
Sample Name IAA1_FP_r3T
Center Name North Carolina State University
Submission SRA1105201
Month 7
Year 2020
Sample Title Ribo footprint samples of auxin treated seedlings at 1h-Replicate 3
Library-Type Ribo-Seq
Replicate-Number 3.0
Condition Test
Tissue Seedling
Cellular-Compartment Auxin
Stage Etiolated seedling
Age Three-day-old
Temperature 22C
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR12343654 Arabidopsis thaliana Ribo-Seq
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

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