SRR12343657 (PRJNA649426)
Processing Status: Completed
General Details
| Sample Name | IAA1_FP_r1T |
|---|---|
| Organism | Arabidopsis thaliana |
| Release Date | 7/2020 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
Run Details
| Spots | 217186036 |
|---|---|
| Total Bases | 25358362192 |
| Total Bases | 25358362192 |
Repository Details
| SRA | SRR12343657 |
|---|---|
| ENA | SRR12343657 |
| BioProject | PRJNA649426 |
Experiment Details
| Title | Ribo footprint samples of auxin treated seedlings at 1h-Replicate 1 |
|---|
Sample Details
| Run Accession | SRR12343657 |
|---|---|
| Total Number Of Spots (Original File)) | 217186036 |
| Total Number Of Bases (Original File) | 25358362192 |
| Average Read Length | 116 |
| Original File Size (Mb) | 8347 |
| Experiment Id | SRX8843362 |
| Library Name | IAA1_FP_r1T |
| Library Strategy | OTHER |
| Library Selection | cDNA |
| Library Source | TRANSCRIPTOMIC |
| Library Layout | SINGLE |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | ILLUMINA |
| Model | NextSeq 500 |
| Sra Project Accession (Srp) | SRP274100 |
| Pubmed Id | <NA> |
| Sample | SRS7106421 |
| Biosample | SAMN15666667 |
| Sample Type | simple |
| Organism Taxid | 3702 |
| Organism | Arabidopsis thaliana |
| Sample Name | IAA1_FP_r1T |
| Center Name | North Carolina State University |
| Submission | SRA1105201 |
| Month | 7 |
| Year | 2020 |
| Author | 0.0 |
| Sample Source | 0.0 |
| Sample Title | Ribo footprint samples of auxin treated seedlings at 1h-Replicate 1 |
| Library-Type | Ribo-Seq |
| Replicate-Number | 1.0 |
| Condition | Test |
| Inhibitor | Cycloheximide |
| Timepoint | NANA |
| Tissue | Seedling |
| Cell-Line | 0.0 |
| Cellular-Compartment | Auxin |
| Stage | Etiolated seedling |
| Gene | 0.0 |
| Sex | 0.0 |
| Strain | 0.0 |
| Age | Three-day-old |
| Infected | 0.0 |
| Disease | 0.0 |
| Genotype | 0.0 |
| Feeding | 0.0 |
| Temperature | 22C |
| Sirna | 0.0 |
| Sgrna | 0.0 |
| Shrna | 0.0 |
| Plasmid | 0.0 |
| Growth-Condition | 0.0 |
| Stress | 0.0 |
| Cancer | 0.0 |
| Microrna | 0.0 |
| Individual | 0.0 |
| Antibody Used | 0.0 |
| Ethnicity | 0.0 |
| Dose | 0.0 |
| Stimulation | 0.0 |
| Host Organism | 0.0 |
| Unique Molecular Identifier (Umi) | 0.0 |
| Adapter Sequence | 0.0 |
| Mode Of Separation | 0.0 |
| Mode Of Rrna Depletion | 0.0 |
| Barcode Information | 0.0 |
| Nucelase Used | 0.0 |
| Kit Used | 0.0 |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR12343657 | Arabidopsis thaliana | 0.0 | 0.0 | Ribo-Seq | Cycloheximide |  |
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| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
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