SRR12343657 (PRJNA649426)

Processing Status: Completed

General Details

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Sample Name IAA1_FP_r1T
Organism Arabidopsis thaliana
Release Date 7/2020

Sample Links

Run Details

Spots 217186036
Total Bases 25358362192
Total Bases 25358362192

Repository Details

SRA SRR12343657
ENA SRR12343657
BioProject PRJNA649426

Experiment Details

Title Ribo footprint samples of auxin treated seedlings at 1h-Replicate 1

Sample Details

Run Accession SRR12343657
Total Number Of Spots (Original File)) 217186036
Total Number Of Bases (Original File) 25358362192
Average Read Length 116
Original File Size (Mb) 8347
Experiment Id SRX8843362
Library Name IAA1_FP_r1T
Library Strategy OTHER
Library Selection cDNA
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model NextSeq 500
Sra Project Accession (Srp) SRP274100
Pubmed Id <NA>
Sample SRS7106421
Biosample SAMN15666667
Sample Type simple
Organism Taxid 3702
Organism Arabidopsis thaliana
Sample Name IAA1_FP_r1T
Center Name North Carolina State University
Submission SRA1105201
Month 7
Year 2020
Sample Title Ribo footprint samples of auxin treated seedlings at 1h-Replicate 1
Library-Type Ribo-Seq
Replicate-Number 1.0
Condition Test
Tissue Seedling
Cellular-Compartment Auxin
Stage Etiolated seedling
Age Three-day-old
Temperature 22C
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR12343657 Arabidopsis thaliana Ribo-Seq
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

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