SRR1258541 (PRJNA245106)

Processing Status: Completed

General Details

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Sample Name Ribosome profiling upf1
Organism Saccharomyces cerevisiae
Release Date 6/2014

Sample Links

Run Details

Spots 21727393
Total Bases 1108097043
Total Bases 1108097043

Repository Details

SRA SRR1258541
ENA SRR1258541
BioProject PRJNA245106

Experiment Details

Title Saccharomyces cerevisiae Ribosome profiling upf1

Sample Details

Run Accession SRR1258541
Total Number Of Spots (Original File)) 21727393
Total Number Of Bases (Original File) 1108097043
Average Read Length 51
Original File Size (Mb) 607
Experiment Id SRX523432
Library Name upf1 Ribosome Profiling 1
Library Strategy OTHER
Library Selection other
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina HiSeq 2500
Sra Project Accession (Srp) SRP041349
Pubmed Id <NA>
Sample SRS595581
Biosample SAMN02731566
Sample Type simple
Organism Taxid 4932
Organism Saccharomyces cerevisiae
Sample Name Ribosome profiling upf1
Center Name Center for RNA Molecular Biology
Submission SRA170837
Month 6
Year 2014
Sample Title Saccharomyces cerevisiae Ribosome profiling upf1
Library-Type Ribo-Seq
Replicate-Number 1.0
Condition Test
Tissue Liquid culture
Cell-Line BY4741
Strain BY4741
Age Mid-log phase growth
Growth-Condition Synthetic dextrose media at 30 degrees Celcius
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR1258541 Saccharomyces cerevisiae BY4741 Ribo-Seq
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

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