SRR1258544 (PRJNA245106)

Processing Status: Completed

General Details

View quality reports

Sample Name Ribosome profiling upf1, fragmented control
Organism Saccharomyces cerevisiae
Release Date 6/2014

Sample Links

Run Details

Spots 7912713
Total Bases 403548363
Total Bases 403548363

Repository Details

SRA SRR1258544
ENA SRR1258544
BioProject PRJNA245106

Experiment Details

Title Saccharomyces cerevisiae Ribosome profiling upf1, fragmented control

Sample Details

Run Accession SRR1258544
Total Number Of Spots (Original File)) 7912713
Total Number Of Bases (Original File) 403548363
Average Read Length 51
Original File Size (Mb) 233
Experiment Id SRX523435
Library Name upf1 Ribosome Profiling, fragmented control
Library Strategy RNA-Seq
Library Selection other
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina HiSeq 2500
Sra Project Accession (Srp) SRP041349
Pubmed Id <NA>
Sample SRS595584
Biosample SAMN02731568
Sample Type simple
Organism Taxid 4932
Organism Saccharomyces cerevisiae
Sample Name Ribosome profiling upf1, fragmented control
Center Name Center for RNA Molecular Biology
Submission SRA170837
Month 6
Year 2014
Sample Title Saccharomyces cerevisiae Ribosome profiling upf1, fragmented control
Library-Type Ribo-Seq
Condition Wild Type
Tissue Liquid culture
Cell-Line BY4741
Strain BY4741
Age Mid-log phase growth
Growth-Condition Synthetic dextrose media at 30 degrees Celcius
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR1258544 Saccharomyces cerevisiae BY4741 Ribo-Seq
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

ⓘ For more Information on the columns shown here see: About