SRR12672556 (PRJNA611824)
Processing Status: Not Yet Started
General Details
| Sample Name | shPDCD4_PC12 |
|---|---|
| Organism | Rattus norvegicus |
| Release Date | 9/2020 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
Run Details
| Spots | 22595342 |
|---|---|
| Total Bases | 4519068400 |
| Total Bases | 4519068400 |
Repository Details
| SRA | SRR12672556 |
|---|---|
| ENA | SRR12672556 |
| BioProject | PRJNA611824 |
Experiment Details
| Title | RNA-Seq and Ribo-Seq from NGF-exposed shPDCD4-PC12 cells |
|---|
Sample Details
| Run Accession | SRR12672556 |
|---|---|
| Total Number Of Spots (Original File)) | 22595342 |
| Total Number Of Bases (Original File) | 4519068400 |
| Average Read Length | 100 |
| Original File Size (Mb) | 1902 |
| Experiment Id | SRX9152748 |
| Library Name | polyA-shPDCD4-1 |
| Library Strategy | RNA-Seq |
| Library Selection | Oligo-dT |
| Library Source | TRANSCRIPTOMIC |
| Library Layout | PAIRED |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | BGISEQ |
| Model | BGISEQ-500 |
| Sra Project Accession (Srp) | SRP283892 |
| Pubmed Id | <NA> |
| Sample | SRS7392736 |
| Biosample | SAMN14350880 |
| Sample Type | simple |
| Organism Taxid | 10116 |
| Organism | Rattus norvegicus |
| Sample Name | shPDCD4_PC12 |
| Center Name | Instituto de Investigaciones Biologicas Clemente Estable |
| Submission | SRA1128123 |
| Month | 9 |
| Year | 2020 |
| Sample Title | RNA-Seq and Ribo-Seq from NGF-exposed shPDCD4-PC12 cells |
| Tissue | not applicable |
| Sex | male |
| Strain | PC12 |
| Age | 72hs of NGF exposure |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR12672556 | Rattus norvegicus |  |
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| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
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