SRR16587388 (PRJNA774895)
Processing Status: Completed
General Details
| Sample Name | GSM5658199 |
|---|---|
| Organism | Homo sapiens |
| Release Date | 2/2023 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
Run Details
| Spots | 60264346 |
|---|---|
| Total Bases | 2402942793 |
| Total Bases | 2402942793 |
Repository Details
| SRA | SRR16587388 |
|---|---|
| ENA | SRR16587388 |
| BioProject | PRJNA774895 |
Experiment Details
| Title | MDA-LM2_rpf_r1 |
|---|
Sample Details
| Run Accession | SRR16587388 |
|---|---|
| Total Number Of Spots (Original File)) | 60264346 |
| Total Number Of Bases (Original File) | 2402942793 |
| Average Read Length | 39 |
| Original File Size (Mb) | 1013 |
| Experiment Id | SRX12788779 |
| Library Name | GSM5658199 |
| Library Strategy | OTHER |
| Library Selection | other |
| Library Source | TRANSCRIPTOMIC |
| Library Layout | SINGLE |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | ILLUMINA |
| Model | Illumina HiSeq 4000 |
| Sra Project Accession (Srp) | SRP343302 |
| Pubmed Id | <NA> |
| Sample | SRS10734810 |
| Biosample | SAMN22590090 |
| Sample Type | simple |
| Organism Taxid | 9606 |
| Organism | Homo sapiens |
| Sample Name | GSM5658199 |
| Center Name | Biochemistry and Biophysics, UCSF |
| Submission | SRA1322668 |
| Month | 2 |
| Year | 2023 |
| Sample Source | breast cancer cell line |
| Sample Title | MDA-LM2_rpf_r1 |
| Library-Type | Ribo-Seq |
| Condition | Test |
| Inhibitor | Cycloheximide |
| Tissue | Breast |
| Cell-Line | MDA |
| Cancer | highly metastatic to lungs |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR16587388 | Homo sapiens | breast cancer cell line | MDA | Ribo-Seq | Cycloheximide |  |
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| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
ⓘ For more Information on the columns shown here see: About