SRR16633459 (PRJNA776169)
Processing Status: Not Yet Started
General Details
| Sample Name | GSM5661177 |
|---|---|
| Organism | Saccharomyces cerevisiae |
| Release Date | 11/2022 |
Sample Links
| GWIPS-viz | Trips-Viz | Custom Track |
|---|---|---|
Run Details
| Spots | 170381957 |
|---|---|
| Total Bases | 12660924314 |
| Total Bases | 12660924314 |
Repository Details
| SRA | SRR16633459 |
|---|---|
| ENA | SRR16633459 |
| BioProject | PRJNA776169 |
Experiment Details
| Title | FLAGUpf1Upf2Upf3_CHX rep1_RNAseq |
|---|
Sample Details
| Run Accession | SRR16633459 |
|---|---|
| Total Number Of Spots (Original File)) | 170381957 |
| Total Number Of Bases (Original File) | 12660924314 |
| Average Read Length | 74 |
| Original File Size (Mb) | 5228 |
| Experiment Id | SRX12834401 |
| Library Name | 0.0 |
| Library Strategy | RNA-Seq |
| Library Selection | cDNA |
| Library Source | TRANSCRIPTOMIC |
| Library Layout | SINGLE |
| Insert Size | 0 |
| Insert Deviation | 0 |
| Platform | ILLUMINA |
| Model | NextSeq 500 |
| Sra Project Accession (Srp) | SRP343728 |
| Pubmed Id | 36192133 |
| Sample | SRS10779233 |
| Biosample | SAMN22771595 |
| Sample Type | simple |
| Organism Taxid | 4932 |
| Organism | Saccharomyces cerevisiae |
| Sample Name | GSM5661177 |
| Center Name | GEO |
| Submission | SRA1319938 |
| Month | 11 |
| Year | 2022 |
| Author | Ganesan |
| Sample Source | HFY871 |
| Sample Title | FLAGUpf1Upf2Upf3_CHX rep1_RNAseq |
| Library-Type | RNA-Seq |
| Replicate-Number | 1.0 |
| Condition | Test |
| Inhibitor | Cycloheximide |
| Timepoint | NANA |
| Tissue | 0.0 |
| Cell-Line | 0.0 |
| Cellular-Compartment | 0.0 |
| Stage | 0.0 |
| Gene | 0.0 |
| Sex | 0.0 |
| Strain | W303 |
| Age | 0.0 |
| Infected | 0.0 |
| Disease | 0.0 |
| Genotype | upf1::HIS3 |
| Feeding | 0.0 |
| Temperature | 0.0 |
| Sirna | 0.0 |
| Sgrna | 0.0 |
| Shrna | 0.0 |
| Plasmid | pG1-FLAG-UPF1, pRS425-UPF2, YEplac195-TPI-UPF3 |
| Growth-Condition | 0.0 |
| Stress | 0.0 |
| Cancer | 0.0 |
| Microrna | 0.0 |
| Individual | 0.0 |
| Antibody Used | 0.0 |
| Ethnicity | 0.0 |
| Dose | 0.0 |
| Stimulation | 0.0 |
| Host Organism | 0.0 |
| Unique Molecular Identifier (Umi) | 0.0 |
| Adapter Sequence | 0.0 |
| Mode Of Separation | 0.0 |
| Mode Of Rrna Depletion | Ribo-Zero Gold |
| Barcode Information | 0.0 |
| Nucelase Used | 0.0 |
| Kit Used | 0.0 |
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR16633459 | Saccharomyces cerevisiae | HFY871 | 0.0 | RNA-Seq | Cycloheximide |  |
 |
 |
 |
|
|
||
| Run Accession | Study Accession | Scientific Name | Description | Cell Line | Library Type | Treatment | Trips-Viz | GWIPS-viz | Reads | BAM | BigWig (F) | BigWig (R) |
ⓘ For more Information on the columns shown here see: About